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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4567 and Psyr_4568 are separated by 62 nucleotides
Psyr_4568 and Psyr_4569 are separated by 264 nucleotides
Psyr_4569 and Psyr_4570 are separated by 133 nucleotides
Psyr_4570 and Psyr_4571 are separated by 85 nucleotides
Psyr_4567: Psyr_4567 - Protein of unknown function UPF0075, at 5,431,616 to 5,432,710
_4567
Psyr_4568: Psyr_4568 - HesB/YadR/YfhF, at 5,432,773 to 5,433,123
_4568
Psyr_4569: Psyr_4569 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,433,388 to 5,434,422
_4569
Psyr_4570: Psyr_4570 - Conserved hypothetical protein 701, at 5,434,556 to 5,434,984
_4570
Psyr_4571: Psyr_4571 - Protein of unknown function DUF805, at 5,435,070 to 5,435,984
_4571
Group
Condition
Psyr
_4567
Psyr
_4568
Psyr
_4569
Psyr
_4570
Psyr
_4571
aphid
library passed through aphids in food, 72 hours
-5.1
N.D.
N.D.
N.D.
+0.2
aphid
library passed through aphids in food, 72 hours
-3.0
N.D.
N.D.
N.D.
+0.1
aphid
library passed through aphids in food, 72 hours
-2.8
N.D.
N.D.
N.D.
-0.1
carbon source
4-hydroxybutyric (C)
-2.2
N.D.
N.D.
N.D.
-0.1
carbon source
Sucrose (C)
-1.8
N.D.
N.D.
N.D.
-0.4
in planta
apoplastic; Lima bean
-1.4
N.D.
N.D.
N.D.
-0.4
in planta
epiphytic; Lima bean
-2.1
N.D.
N.D.
N.D.
+0.2
aphid
library passed through aphids in food, 24 hours
-1.6
N.D.
N.D.
N.D.
-0.1
in planta
apoplastic; Lima bean
-1.5
N.D.
N.D.
N.D.
-0.3
in planta
Green bean; epiphytic
-1.3
N.D.
N.D.
N.D.
-0.4
in planta
epiphytic; Lima bean
-1.3
N.D.
N.D.
N.D.
-0.2
aphid
library passed through aphids in food, 24 hours
-1.4
N.D.
N.D.
N.D.
-0.1
aphid
library passed through aphids in food, 24 hours
-1.3
N.D.
N.D.
N.D.
-0.1
stress
MBOA 2.5 mM
-1.5
N.D.
N.D.
N.D.
+0.1
aphid
library passed through aphids in food, 24 hours
-1.1
N.D.
N.D.
N.D.
-0.1
stress
MBOA 2.5 mM
-1.1
N.D.
N.D.
N.D.
-0.1
carbon source
Glycerol (C)
-0.7
N.D.
N.D.
N.D.
-0.4
in planta
epiphytic; Green bean
-1.3
N.D.
N.D.
N.D.
+0.1
in planta
epiphytic; Green bean
-1.2
N.D.
N.D.
N.D.
+0.1
in planta
Green bean; epiphytic
-1.1
N.D.
N.D.
N.D.
+0.1
in planta
epiphytic; Lima bean
-1.1
N.D.
N.D.
N.D.
+0.1
in planta
epiphytic; Green bean
-1.1
N.D.
N.D.
N.D.
+0.2
in planta
epiphytic; Lima bean
-1.0
N.D.
N.D.
N.D.
+0.3
in planta
apoplastic, chopping recovery; Green bean
-0.3
N.D.
N.D.
N.D.
+0.9
stress
KB with Acriflavine 7.75 ug/ml
+1.3
N.D.
N.D.
N.D.
-0.1
stress
KB with Fusaric 250 ug/ml
+0.7
N.D.
N.D.
N.D.
+0.5
stress
KB with Erythromycin 25 ug/ml
+1.4
N.D.
N.D.
N.D.
-0.0
stress
KB with Novobiocin 250 ug/ml
+1.4
N.D.
N.D.
N.D.
+0.1
stress
KB with Nalidixic 12.5 ug/ml
+1.3
N.D.
N.D.
N.D.
+0.9
stress
KB with Plumbagin 10 mM
+2.1
N.D.
N.D.
N.D.
+0.3
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