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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4332 and Psyr_4333 are separated by 25 nucleotides
Psyr_4333 and Psyr_4334 are separated by 6 nucleotides
Psyr_4334 and Psyr_4335 are separated by 381 nucleotides
Psyr_4335 and Psyr_4336 are separated by 13 nucleotides
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Psyr_4335: Psyr_4335 - transcriptional regulator, AsnC family, at 5,187,086 to 5,187,577
_4335
Psyr_4336: Psyr_4336 - ribosomal large subunit pseudouridine synthase E, at 5,187,591 to 5,188,223
_4336
Group
Condition
Psyr
_4332
Psyr
_4333
Psyr
_4334
Psyr
_4335
Psyr
_4336
in planta
apoplastic, grinding recovery; Green bean
-0.2
+0.1
-0.2
-1.7
-1.0
in planta
apoplastic; Pepper
-0.1
+0.4
+0.0
-2.0
-0.6
in planta
epiphytic; Green bean
+0.2
+0.1
-0.2
-2.3
-0.1
in planta
apoplastic, grinding recovery; Green bean
-0.2
+0.2
+0.1
-0.7
-1.3
aphid
library passed through aphids in food, 72 hours
-0.4
+0.3
-0.1
-2.6
+0.9
carbon source
Citric Acid (C)
-0.3
-0.0
-0.0
-0.6
-0.8
in planta
apoplastic; Lima bean
-0.0
+0.1
-0.0
-0.9
-0.7
stress
KB with Conessine 10 mM
-0.3
+0.2
-0.0
-1.2
-0.2
stress
DMSO
-0.1
-0.3
-0.1
-1.1
+0.2
stress
KB with Nalidixic 12.5 ug/ml
+0.1
-0.1
+0.2
-0.5
-1.0
in planta
apoplastic, sonication recovery; Green bean
-0.4
-0.4
+0.2
+1.6
-1.9
no stress control
no stress control
-0.2
-0.3
-0.0
-1.0
+0.7
in planta
epiphytic; Lima bean
+0.1
-0.5
-0.1
-0.6
+0.6
carbon source
L-Malic (C)
+0.0
-0.1
-0.2
-0.7
+0.6
stress
KB with Oxonitine 10 mM
-0.0
-0.2
+0.1
-0.8
+0.7
stress
KB with Ginkgolide A 10 mM
+0.0
+0.2
+0.2
-1.0
+0.4
stress
KB with Cantharidin 10 mM
+0.1
-0.0
+0.1
-0.9
+0.7
in planta
apoplastic, sonication recovery; Green bean
-0.3
-0.5
+0.2
+1.4
-0.8
carbon source
L-Proline (C)
+0.0
-0.0
-0.0
-0.8
+1.0
carbon source
Sucrose (C)
-0.5
-0.1
-0.1
+0.3
+1.1
in planta
apoplastic; Green bean; 13 days
-0.3
+0.3
+0.5
-0.3
+0.6
in planta
apoplastic; Green bean; 6 days
+0.0
-0.2
+0.1
+1.0
+0.3
stress
KB with Fusaric 250 ug/ml
+0.3
+0.2
+0.2
-0.2
+0.9
stress
KB with Plumbagin 10 mM
-0.2
+0.2
+0.2
+1.0
+0.3
in planta
apoplastic; Pepper
+0.0
-0.1
-0.2
+0.8
+1.1
stress
KB with Acridine orange 62.5 ug/ml
-0.1
+0.7
+0.1
+1.4
-0.4
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
+0.3
+0.3
+1.7
-0.3
in planta
apoplastic; Pepper
+0.1
-0.2
-0.1
+1.2
+1.1
stress
KB with Esculin Monohydrate 10 mM
+0.0
-0.0
+0.2
+0.9
+1.1
in planta
epiphytic; Lima bean
+0.4
+0.0
-0.2
+0.6
+1.4
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