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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4329 and Psyr_4330 are separated by 9 nucleotides
Psyr_4330 and Psyr_4331 are separated by 153 nucleotides
Psyr_4331 and Psyr_4332 are separated by 274 nucleotides
Psyr_4332 and Psyr_4333 are separated by 25 nucleotides
Psyr_4329: Psyr_4329 - conserved hypothetical protein, at 5,181,396 to 5,181,935
_4329
Psyr_4330: Psyr_4330 - conserved domain protein, at 5,181,945 to 5,182,838
_4330
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Group
Condition
Psyr
_4329
Psyr
_4330
Psyr
_4331
Psyr
_4332
Psyr
_4333
in planta
apoplastic; Green bean; 13 days
-1.5
-0.3
N.D.
-0.3
+0.3
in planta
apoplastic, grinding recovery; Green bean
-0.3
-1.1
N.D.
-0.2
+0.2
in planta
apoplastic; Lima bean
-0.5
-0.1
N.D.
-0.2
-0.3
in planta
apoplastic; Pepper
-0.1
-0.7
N.D.
+0.1
-0.2
in planta
apoplastic, chopping recovery; Green bean
-0.5
-0.2
N.D.
-0.2
+0.0
carbon source
4-hydroxybutyric (C)
-0.3
-0.4
N.D.
-0.3
+0.1
stress
KB with Khayasin C 10 mM
-0.4
-0.3
N.D.
+0.1
-0.2
no stress control
no stress control
-0.3
+0.3
N.D.
-0.1
-0.6
carbon source
Sucrose (C)
+0.3
-0.4
N.D.
-0.5
-0.1
aphid
library passed through aphids in food, 72 hours
-0.2
-0.5
N.D.
-0.2
+0.2
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.3
N.D.
-0.4
-0.4
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.4
+0.2
N.D.
-0.3
-0.0
in planta
apoplastic, sonication recovery; Green bean
+0.0
+0.3
N.D.
-0.3
-0.5
in planta
epiphytic; Lima bean
-0.7
+0.5
N.D.
+0.1
-0.5
aphid
library passed through aphids in food, 72 hours
-0.0
-0.3
N.D.
-0.4
+0.3
stress
MBOA 1.2 mM
+0.1
+0.2
N.D.
+0.1
-0.7
stress
KB with Rotenone 0.25 mg/ml
-0.4
+0.3
N.D.
-0.1
-0.1
stress
MBOA 0.5 mM
+0.4
-0.1
N.D.
-0.1
-0.5
stress
MBOA 1.2 mM
+0.3
+0.2
N.D.
-0.3
-0.2
stress
KB with Chrysophanol 10 mM
+0.6
-0.3
N.D.
-0.2
+0.0
in planta
apoplastic; Lima bean
-0.2
+0.4
N.D.
-0.3
+0.2
in planta
epiphytic; Green bean
+0.4
+0.2
N.D.
+0.1
-0.4
stress
KB with Avocatin B 10 mM
+0.6
-0.2
N.D.
-0.2
+0.2
in planta
epiphytic; Lima bean
-0.4
+0.4
N.D.
+0.4
+0.0
stress
KB with Resveratrol 10 mM
+0.6
+0.2
N.D.
+0.0
-0.2
in planta
apoplastic; Lima bean
+0.3
+0.3
N.D.
-0.3
+0.3
in planta
epiphytic; Green bean
+0.5
-0.3
N.D.
+0.3
+0.0
stress
KB with Fusaric 250 ug/ml
-0.2
+0.3
N.D.
+0.3
+0.2
stress
KB with Acridine orange 62.5 ug/ml
+0.0
+0.3
N.D.
-0.1
+0.7
stress
KB with Terpene 10 mM
+0.5
+0.1
N.D.
+0.2
+0.4
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