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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4204 and Psyr_4205 are separated by 770 nucleotides
Psyr_4205 and Psyr_4206 are separated by 808 nucleotides
Psyr_4206 and Psyr_4207 are separated by 15 nucleotides
Psyr_4207 and Psyr_4208 are separated by 391 nucleotides
Psyr_4204: Psyr_4204 - conserved hypothetical protein, at 4,999,429 to 4,999,713
_4204
Psyr_4205: Psyr_4205 - insecticidal toxin complex protein TcdA1, at 5,000,484 to 5,007,992
_4205
Psyr_4206: Psyr_4206 - GGDEF domain protein, at 5,008,801 to 5,009,886
_4206
Psyr_4207: Psyr_4207 - GCN5-related N-acetyltransferase, at 5,009,902 to 5,010,333
_4207
Psyr_4208: Psyr_4208 - heme catalase/peroxidase, at 5,010,725 to 5,012,995
_4208
Group
Condition
Psyr
_4204
Psyr
_4205
Psyr
_4206
Psyr
_4207
Psyr
_4208
stress
KB with Acriflavine 7.75 ug/ml
N.D.
-0.3
-0.3
+0.3
-1.2
aphid
library passed through aphids in food, 72 hours
N.D.
-0.1
-0.3
-0.5
-0.2
stress
KB with Berberine 250 ug/ml
N.D.
-0.2
-0.3
+0.1
-0.2
stress
KB with Fusaric 250 ug/ml
N.D.
-0.0
-0.1
+0.3
-0.7
in planta
epiphytic; Green bean
N.D.
+0.1
+0.1
-0.4
-0.3
stress
KB with Nalidixic 12.5 ug/ml
N.D.
-0.2
-0.2
+0.2
-0.3
aphid
library passed through aphids in food, 72 hours
N.D.
-0.0
-0.4
-0.1
+0.1
stress
KB with Chrysin 10 mM
N.D.
-0.1
-0.2
+0.1
-0.2
stress
KB with Erythromycin 25 ug/ml
N.D.
-0.0
-0.1
+0.3
-0.5
stress
KB with Quinine Hdrochloride 10 mM
N.D.
-0.1
-0.1
+0.2
-0.2
stress
KB with Cimicifugoside H1 10 mM
N.D.
-0.1
-0.1
+0.2
-0.3
carbon source
Citric Acid (C)
N.D.
+0.1
+0.1
+0.1
-0.5
stress
KB with Mitomycin C 0.625 ug/ml
N.D.
-0.2
-0.4
+0.3
+0.2
stress
KB with Harmalol 10 mM
N.D.
-0.1
+0.0
+0.4
-0.5
stress
KB with Phloretin 250 ug/ml
N.D.
-0.0
-0.1
+0.5
-0.6
stress
KB with Fusaric 250 ug/ml
N.D.
-0.1
-0.3
+0.5
-0.2
in planta
apoplastic, grinding recovery; Green bean
N.D.
-0.1
+0.1
+0.3
-0.3
in planta
epiphytic; Green bean
N.D.
+0.1
+0.3
-0.0
-0.3
stress
KB with Theaflavin 10 mM
N.D.
-0.2
-0.2
+0.5
-0.1
carbon source
L-Proline (C)
N.D.
+0.2
-0.0
+0.2
-0.3
carbon source
Glycerol (C)
N.D.
+0.1
+0.1
+0.4
-0.3
stress
KB with Naringin 250 ug/ml
N.D.
-0.1
-0.1
+0.5
-0.0
carbon source
D-Mannose (C)
N.D.
+0.1
+0.1
+0.6
-0.3
in planta
apoplastic, sonication recovery; Green bean
N.D.
+0.0
+0.1
+0.4
-0.1
in planta
apoplastic, chopping recovery; Green bean
N.D.
+0.1
+0.3
-0.1
+0.3
stress
KB with Diallyl sulfide 10 mM
N.D.
+0.1
-0.0
+0.5
+0.1
stress
KB with Plumbagin 10 mM
N.D.
+0.0
-0.1
+0.5
+0.3
stress
KB with Paclitaxel 10 mM
N.D.
+0.1
-0.1
+0.5
+0.2
stress
KB with Curcumin 10 mM
N.D.
+0.1
+0.1
+0.3
+0.2
in planta
apoplastic; Pepper
N.D.
+0.0
+0.1
+0.3
+0.5
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