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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4042 and Psyr_4043 are separated by 570 nucleotides
Psyr_4043 and Psyr_4044 are separated by 40 nucleotides
Psyr_4044 and Psyr_4045 are separated by 1 nucleotides
Psyr_4045 and Psyr_4046 are separated by 89 nucleotides
Psyr_4042: Psyr_4042 - hypothetical protein, at 4,827,044 to 4,827,484
_4042
Psyr_4043: Psyr_4043 - hypothetical protein, at 4,828,055 to 4,828,288
_4043
Psyr_4044: Psyr_4044 - Phospholipase D/Transphosphatidylase, at 4,828,329 to 4,829,486
_4044
Psyr_4045: Psyr_4045 - YceI, at 4,829,488 to 4,830,069
_4045
Psyr_4046: Psyr_4046 - conserved hypothetical protein, at 4,830,159 to 4,830,488
_4046
Group
Condition
Psyr
_4042
Psyr
_4043
Psyr
_4044
Psyr
_4045
Psyr
_4046
in planta
apoplastic, grinding recovery; Green bean
+0.1
-0.2
-2.6
-0.7
+0.3
in planta
apoplastic, chopping recovery; Green bean
-0.4
-0.4
-1.1
-0.1
-0.1
in planta
apoplastic, sonication recovery; Green bean
+0.0
-1.1
-0.9
-0.4
+0.4
in planta
apoplastic, sonication recovery; Green bean
-0.1
-1.1
-1.0
-0.2
+0.5
in planta
apoplastic, grinding recovery; Green bean
+0.1
-0.2
-1.1
-0.2
+0.4
in planta
epiphytic; Green bean
-0.1
-0.8
+0.4
-0.2
-0.0
stress
KB with Terpene 10 mM
-0.1
-0.9
-0.4
+0.6
+0.1
stress
KB with Ginkgolide A 10 mM
+0.1
-0.9
+0.1
+0.5
-0.2
stress
KB with Resveratrol 10 mM
+0.0
-1.0
+0.1
+0.4
+0.0
in planta
Green bean; epiphytic
+0.1
+0.3
+0.3
-0.4
-0.6
stress
KB with Levodopa 10 mM
-0.2
-0.6
+0.2
+0.5
-0.2
stress
KB with Palmatine chloride 10 mM
-0.2
-0.8
+0.1
+0.6
-0.0
stress
KB with Conessine 10 mM
-0.1
-0.8
-0.0
+0.8
-0.0
carbon source
Glycerol (C)
+0.2
-0.7
+0.3
-0.1
+0.1
stress
KB with Xanthyletin 10 mM
-0.3
-0.5
+0.2
+0.2
+0.2
carbon source
Fumaric (C)
+0.1
-0.8
+0.4
+0.1
-0.0
stress
KB with Aristolochic Acid 10 mM
-0.2
+0.3
-0.3
-0.4
+0.5
carbon source
Succinic Acid (C)
+0.2
-0.9
+0.0
+0.1
+0.4
stress
KB with Plumbagin 10 mM
-0.1
-1.1
+0.3
+0.6
+0.2
stress
KB with Acridine orange 62.5 ug/ml
-0.4
+0.7
-0.5
+0.2
+0.2
aphid
library passed through aphids in food, 72 hours
+0.1
+1.1
-0.1
+0.1
-0.2
stress
KB with Fusaric 250 ug/ml
-0.2
+0.1
+0.7
+0.3
+0.2
stress
KB with Methanol 5 vol%
-0.2
+0.8
+0.7
+0.2
-0.4
stress
KB with Quercetin 360 ug/ml
-0.2
+0.8
+0.8
-0.2
+0.0
stress
KB with Esculin Monohydrate 10 mM
-0.3
+0.2
+0.8
+0.4
+0.2
stress
KB with Ferulic Acid 180 ug/ml
-0.1
+0.5
+0.9
-0.1
+0.1
stress
KB with Mitomycin C 0.625 ug/ml
-0.3
+1.0
-0.1
+0.5
+0.2
in planta
apoplastic; Green bean; 13 days
+0.5
+0.5
+1.3
-0.4
-0.2
in planta
apoplastic; Lima bean
+0.2
-0.1
+0.9
+0.6
+0.2
in planta
apoplastic; Pepper
-0.0
+0.7
+0.5
+0.4
+0.4
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