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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4001 and Psyr_4002 are separated by 145 nucleotides
Psyr_4002 and Psyr_4003 are separated by 0 nucleotides
Psyr_4003 and Psyr_4004 are separated by 462 nucleotides
Psyr_4004 and Psyr_4005 are separated by 14 nucleotides
Psyr_4001: Psyr_4001 - conserved domain protein, at 4,765,255 to 4,765,572
_4001
Psyr_4002: Psyr_4002 - conserved hypothetical protein, at 4,765,718 to 4,766,341
_4002
Psyr_4003: Psyr_4003 - conserved hypothetical protein, at 4,766,342 to 4,766,581
_4003
Psyr_4004: Psyr_4004 - Drug resistance transporter EmrB/QacA subfamily, at 4,767,044 to 4,768,540
_4004
Psyr_4005: Psyr_4005 - conserved hypothetical protein, at 4,768,555 to 4,769,688
_4005
Group
Condition
Psyr
_4001
Psyr
_4002
Psyr
_4003
Psyr
_4004
Psyr
_4005
stress
KB with Ginkgolide A 10 mM
-2.0
+0.0
+0.1
+0.4
-0.0
in planta
apoplastic; Lima bean
-1.1
+0.2
-0.3
-0.3
-0.1
stress
MBOA 1.2 mM
-0.8
-0.2
-0.3
+0.0
+0.1
stress
KB with Isovanillin 10 mM
-0.7
-0.0
-0.7
+0.1
+0.0
in planta
apoplastic; Pepper
-1.0
+0.1
+0.1
-0.1
-0.2
stress
KB with Harmol 10 mM
-0.9
+0.2
-0.3
+0.0
+0.0
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.5
-0.2
-0.6
+0.1
+0.3
stress
KB with 4-hydroxychalcone 10 mM
-0.8
+0.2
-0.2
+0.1
-0.1
stress
KB with Nalidixic 12.5 ug/ml
-0.9
-0.1
-0.4
+0.2
+0.6
stress
KB with Harmalol 10 mM
-1.1
+0.2
+0.2
+0.1
-0.0
aphid
library passed through aphids in food, 72 hours
-0.7
-0.3
+0.1
+0.2
+0.2
stress
MBOA 1.2 mM
-0.9
+0.3
+0.1
-0.0
+0.1
stress
KB with Dimethyl Sulfoxide 1 vol%
-0.7
+0.2
-0.2
+0.3
+0.1
stress
KB with Biochanin a diacetate 10 mM
-0.4
+0.3
-0.2
+0.4
-0.3
in planta
apoplastic; Pepper
-0.5
-0.6
+0.5
+0.2
+0.1
stress
KB with Conessine 10 mM
-0.6
+0.3
+0.5
-0.1
-0.2
stress
KB with Veratrine 10 mM
-0.5
+0.4
+0.2
+0.1
-0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.6
+1.0
-0.6
+0.0
+0.3
in planta
apoplastic; Pepper
-0.4
-0.3
+0.4
+0.3
+0.1
stress
KB with Fusaric 250 ug/ml
-0.2
+0.3
-0.6
+0.4
+0.3
in planta
epiphytic; Lima bean
-0.4
+0.5
+0.1
-0.3
+0.4
stress
KB with Karanjin 10 mM
+0.5
+0.2
-0.5
+0.1
+0.1
stress
KB with Mitomycin C 0.625 ug/ml
+0.0
+0.8
-0.5
+0.1
+0.1
in planta
apoplastic, grinding recovery; Green bean
+1.3
-0.8
+0.3
-0.1
+0.1
stress
KB with Novobiocin 250 ug/ml
+0.0
+0.3
-0.7
+0.5
+0.8
in planta
apoplastic, sonication recovery; Green bean
+1.2
-0.0
-0.9
+0.4
+0.3
in planta
apoplastic, sonication recovery; Green bean
+1.1
-0.3
-0.2
+0.4
+0.4
stress
KB with Gambogic Acid 10 mM
+0.8
+0.3
-0.0
+0.1
+0.2
aphid
library passed through aphids in food, 72 hours
+0.6
-0.2
+1.1
+0.2
-0.1
stress
KB with Acridine orange 62.5 ug/ml
+1.2
+1.0
-0.4
+0.0
+0.4
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