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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3796 and Psyr_3797 are separated by 88 nucleotides
Psyr_3797 and Psyr_3798 are separated by 117 nucleotides
Psyr_3798 and Psyr_3799 are separated by 57 nucleotides
Psyr_3799 and Psyr_3800 overlap by 4 nucleotides
Psyr_3796: Psyr_3796 - transcriptional regulator, LysR family, at 4,513,374 to 4,514,273
_3796
Psyr_3797: Psyr_3797 - NAD(P)H dehydrogenase (quinone), at 4,514,362 to 4,515,162
_3797
Psyr_3798: Psyr_3798 - conserved domain protein, at 4,515,280 to 4,515,795
_3798
Psyr_3799: Psyr_3799 - conserved hypothetical protein, at 4,515,853 to 4,516,881
_3799
Psyr_3800: Psyr_3800 - Major facilitator superfamily, at 4,516,878 to 4,518,140
_3800
Group
Condition
Psyr
_3796
Psyr
_3797
Psyr
_3798
Psyr
_3799
Psyr
_3800
in planta
apoplastic; Lima bean
-0.8
-0.1
-0.1
-0.1
-0.5
in planta
apoplastic; Lima bean
-1.1
-0.3
+0.0
+0.1
-0.3
in planta
apoplastic; Pepper
-1.0
-0.1
+0.1
+0.2
-0.5
stress
KB with Flavone 0.25 mg/ml
-0.7
-0.3
+0.0
-0.0
-0.1
carbon source
Fumaric (C)
-0.8
+0.1
+0.1
+0.1
-0.6
in planta
apoplastic, chopping recovery; Green bean
-0.6
-0.5
+0.1
-0.3
+0.2
aphid
library passed through aphids in food, 72 hours
-0.9
-0.9
+0.4
+0.1
+0.3
stress
KB with Isoliquiritigenin 10 mM
-0.5
+0.2
-0.3
-0.2
-0.2
in planta
apoplastic; Pepper
-0.6
-0.0
+0.1
+0.1
-0.4
stress
KB with Palmatine chloride 10 mM
-1.1
+0.2
+0.0
+0.1
+0.0
kb
KB
-0.6
+0.4
-0.1
-0.1
-0.2
stress
KB with 4-hydroxychalcone 10 mM
-0.9
+0.6
-0.3
+0.0
-0.0
stress
KB with Paclitaxel 10 mM
-0.5
+0.4
-0.3
-0.1
-0.0
stress
KB with Cimicifugoside H1 10 mM
-0.5
-0.2
+0.3
+0.1
-0.3
carbon source
4-hydroxybutyric (C)
+0.1
+0.2
+0.1
+0.1
-0.9
in planta
apoplastic; Green bean; 13 days
+0.8
-0.6
-0.3
+0.1
-0.3
stress
KB with Avocatin B 10 mM
-0.8
+0.3
+0.3
-0.1
+0.2
stress
KB with Avocadyne 10 mM
-0.7
+0.2
+0.2
+0.1
+0.2
stress
KB with Novobiocin 250 ug/ml
-0.7
+0.2
+0.3
-0.1
+0.3
in planta
epiphytic; Green bean
+0.5
-0.0
-0.4
+0.2
-0.2
stress
KB with Irigenin 10 mM
+0.5
+0.3
+0.2
-0.2
-0.3
stress
KB with Mitomycin C 0.625 ug/ml
+1.0
-0.2
-0.4
-0.1
+0.2
stress
KB with Phloretin 250 ug/ml
+0.6
+0.2
+0.2
+0.1
-0.5
stress
KB with Dimethyl Sulfoxide 1 vol%
+0.6
+0.1
+0.2
+0.1
-0.3
stress
KB with Berberine 250 ug/ml
+0.6
+0.3
+0.3
-0.1
-0.3
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+1.3
+0.1
-0.4
+0.0
+0.0
in planta
apoplastic, grinding recovery; Green bean
+0.1
+0.3
+0.4
-0.1
+0.4
stress
KB with Fusaric 250 ug/ml
+0.7
+0.4
+0.2
-0.1
-0.1
in planta
apoplastic, sonication recovery; Green bean
+1.0
+0.1
+0.5
-0.3
+0.4
in planta
apoplastic, sonication recovery; Green bean
+1.2
+0.1
+0.4
-0.2
+0.4
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