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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3732 and Psyr_3733 are separated by 180 nucleotides
Psyr_3733 and Psyr_3734 are separated by 91 nucleotides
Psyr_3734 and Psyr_3735 are separated by 559 nucleotides
Psyr_3735 and Psyr_3736 are separated by 625 nucleotides
Psyr_3732: Psyr_3732 - hypothetical protein, at 4,439,857 to 4,440,036
_3732
Psyr_3733: Psyr_3733 - Outer membrane autotransporter barrel, at 4,440,217 to 4,443,333
_3733
Psyr_3734: Psyr_3734 - Outer membrane autotransporter barrel, at 4,443,425 to 4,446,430
_3734
Psyr_3735: Psyr_3735 - PAS, at 4,446,990 to 4,448,555
_3735
Psyr_3736: Psyr_3736 - Peptidoglycan-binding LysM, at 4,449,181 to 4,451,394
_3736
Group
Condition
Psyr
_3732
Psyr
_3733
Psyr
_3734
Psyr
_3735
Psyr
_3736
stress
KB with Acridine orange 62.5 ug/ml
N.D.
-0.3
-0.3
-0.2
-0.4
aphid
library passed through aphids in food, 72 hours
N.D.
+0.2
-0.4
-0.5
-0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
N.D.
-0.1
-0.3
-0.2
-0.2
in planta
apoplastic; Pepper
N.D.
-0.3
+0.1
-0.1
-0.3
carbon source
L-Malic (C)
N.D.
+0.0
-0.1
+0.3
-0.3
carbon source
D-Mannose (C)
N.D.
-0.1
-0.2
-0.2
+0.4
stress
KB with Dimethyl Sulfoxide 1 vol%
N.D.
+0.1
+0.1
+0.1
-0.4
in planta
apoplastic; Green bean; 6 days
N.D.
-0.1
+0.1
-0.3
+0.3
stress
KB with Nonanoic 10 mM
N.D.
+0.3
+0.1
+0.1
-0.4
in planta
apoplastic, sonication recovery; Green bean
N.D.
+0.5
-0.1
-0.3
-0.1
stress
KB with dihydrojasmonic, methyl ester 10 mM
N.D.
+0.1
+0.1
+0.3
-0.4
stress
KB with Ferulic Acid 180 ug/ml
N.D.
+0.1
+0.1
-0.5
+0.3
in planta
apoplastic, grinding recovery; Green bean
N.D.
-0.1
+0.2
+0.4
-0.4
stress
KB with Nitrofurantoin 125 ug/ml
N.D.
+0.3
+0.1
+0.2
-0.4
aphid
library passed through aphids in food, 72 hours
N.D.
+0.5
+0.1
-0.2
-0.2
stress
KB with Lupeol 10 mM
N.D.
+0.2
+0.1
+0.3
-0.3
carbon source
Citric Acid (C)
N.D.
-0.3
+0.0
+0.3
+0.3
stress
KB with Gossypetin 10 mM
N.D.
+0.2
+0.1
+0.2
-0.2
stress
KB with Fusaric 250 ug/ml
N.D.
+0.3
+0.3
-0.1
-0.1
in planta
apoplastic; Lima bean
N.D.
-0.2
+0.1
+0.2
+0.3
carbon source
Sucrose (C)
N.D.
-0.0
-0.1
-0.1
+0.6
stress
KB with Hydrastine (1R, 9S) 10 mM
N.D.
+0.2
+0.1
+0.3
-0.2
in planta
apoplastic, chopping recovery; Green bean
N.D.
+0.2
+0.2
-0.2
+0.3
stress
KB with Novobiocin 250 ug/ml
N.D.
-0.1
+0.2
-0.1
+0.5
in planta
apoplastic, sonication recovery; Green bean
N.D.
+0.6
-0.1
-0.0
+0.1
in planta
apoplastic; Pepper
N.D.
-0.2
+0.0
+0.2
+0.6
stress
KB with Anisodamine Hydrobromide () 10 mM
N.D.
+0.3
+0.2
+0.2
-0.1
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
N.D.
+0.3
+0.1
+0.2
+0.3
in planta
epiphytic; Green bean
N.D.
+0.0
+0.1
+0.4
+0.4
in planta
apoplastic; Pepper
N.D.
-0.0
+0.2
+0.3
+0.6
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