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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3700 and Psyr_3701 are separated by 170 nucleotides
Psyr_3701 and Psyr_3702 are separated by 128 nucleotides
Psyr_3702 and Psyr_3703 overlap by 4 nucleotides
Psyr_3703 and Psyr_3704 are separated by 99 nucleotides
Psyr_3700: Psyr_3700 - Protein of unknown function DUF306, at 4,388,818 to 4,389,225
_3700
Psyr_3701: Psyr_3701 - thioredoxin, putative, at 4,389,396 to 4,389,863
_3701
Psyr_3702: Psyr_3702 - Arsenate reductase, at 4,389,992 to 4,390,345
_3702
Psyr_3703: Psyr_3703 - Flavodoxin/nitric oxide synthase, at 4,390,342 to 4,390,947
_3703
Psyr_3704: Psyr_3704 - conserved hypothetical protein, at 4,391,047 to 4,391,718
_3704
Group
Condition
Psyr
_3700
Psyr
_3701
Psyr
_3702
Psyr
_3703
Psyr
_3704
aphid
library passed through aphids in food, 72 hours
-0.9
-3.0
+0.0
-0.1
+1.0
stress
KB with Asiaticoside 10 mM
-0.3
-1.1
-1.1
-0.2
+0.0
carbon source
4-hydroxybutyric (C)
+0.0
-1.0
-1.2
-0.7
+0.2
in planta
apoplastic, sonication recovery; Green bean
-0.2
-2.5
+1.7
-0.8
-0.6
stress
KB with Ferulic Acid 180 ug/ml
-0.1
-1.0
-0.1
-1.6
+0.5
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.1
-1.7
+0.2
-0.8
+0.2
stress
KB with capsaicin 0.125 mg/ml
+0.0
-2.2
+0.3
-0.1
-0.0
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.1
-1.6
+0.2
-0.9
+0.1
in planta
apoplastic, grinding recovery; Green bean
+0.1
-3.8
+1.0
+0.4
+0.3
aphid
library passed through aphids in food, 72 hours
+0.1
-2.7
+0.2
+0.6
-0.1
in planta
apoplastic, sonication recovery; Green bean
-0.0
-3.2
+2.3
+0.2
-0.5
in planta
apoplastic, chopping recovery; Green bean
+0.5
+0.5
-0.9
-0.2
-0.8
stress
KB with Isoliquiritigenin 10 mM
+0.1
-2.0
+0.2
+0.7
+0.2
stress
KB with Avocatin A 10 mM
+0.2
-1.6
-0.3
+1.0
+0.1
stress
KB with Prenyletin 10 mM
-0.2
-2.0
+1.1
+0.7
-0.1
in planta
epiphytic; Lima bean
-0.2
-1.0
+0.9
-0.4
+0.3
stress
KB with Chrysophanol 10 mM
+0.0
-1.4
+0.9
+0.3
-0.2
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.3
-1.5
+0.7
+0.8
+0.0
stress
KB with Ginkgolide A 10 mM
+0.2
-1.5
+0.4
+0.7
+0.1
in planta
apoplastic, grinding recovery; Green bean
-0.1
-1.3
+1.0
+0.1
+0.5
stress
KB with Acridine orange 62.5 ug/ml
+0.0
-1.1
+1.9
-0.2
+0.1
in planta
apoplastic; Lima bean
-0.3
+0.6
+1.2
-0.5
-0.4
stress
KB with Sclareolide 10 mM
+0.1
-0.9
+1.1
+0.7
-0.3
stress
KB with Paclitaxel 10 mM
-0.1
-0.8
+1.3
+0.6
-0.2
stress
KB with Physcion 10 mM
+0.1
-1.0
+0.9
+0.8
+0.0
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
-0.8
+0.9
+0.6
+0.4
stress
KB with Nonanoic 10 mM
+0.2
-1.0
+1.1
+0.9
-0.1
in planta
apoplastic; Pepper
+0.1
-0.6
+1.6
+0.1
+0.4
stress
KB with Mitomycin C 0.625 ug/ml
+0.0
-0.1
+1.7
+0.9
+0.3
stress
KB with Palmatine chloride 10 mM
+0.2
+0.4
+1.1
+1.0
+0.2
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