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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3659 and Psyr_3660 are separated by 15 nucleotides
Psyr_3660 and Psyr_3661 are separated by 169 nucleotides
Psyr_3661 and Psyr_3662 overlap by 8 nucleotides
Psyr_3662 and Psyr_3663 are separated by 20 nucleotides
Psyr_3659: Psyr_3659 - transcriptional regulator, BolA protein family, at 4,346,503 to 4,346,796
_3659
Psyr_3660: Psyr_3660 - conserved hypothetical protein, at 4,346,812 to 4,347,339
_3660
Psyr_3661: Psyr_3661 - Fumarate hydratase, class II, at 4,347,509 to 4,348,903
_3661
Psyr_3662: Psyr_3662 - NAD(P)H dehydrogenase (quinone), at 4,348,896 to 4,349,510
_3662
Psyr_3663: Psyr_3663 - Protein of unknown function DUF6, at 4,349,531 to 4,350,490
_3663
Group
Condition
Psyr
_3659
Psyr
_3660
Psyr
_3661
Psyr
_3662
Psyr
_3663
aphid
library passed through aphids in food, 72 hours
-0.8
-0.6
-0.6
-1.0
+0.0
in planta
apoplastic; Pepper
+0.4
-0.5
-0.9
-1.0
-0.0
stress
KB with Berberine 250 ug/ml
-0.3
-0.2
-0.6
-0.5
-0.4
carbon source
Fumaric (C)
-0.5
-0.5
-0.6
-0.4
+0.1
stress
KB with Acriflavine 7.75 ug/ml
-0.2
-0.9
-0.2
-0.2
-0.4
in planta
epiphytic; Lima bean
-0.2
-0.4
-0.2
-0.7
+0.1
in planta
apoplastic, grinding recovery; Green bean
+0.6
-0.4
-1.1
-0.5
+0.3
in planta
epiphytic; Green bean
+0.2
-0.1
-1.0
-0.3
-0.0
carbon source
4-hydroxybutyric (C)
-0.5
-0.8
+0.2
-0.1
+0.1
in planta
apoplastic; Pepper
+0.5
-0.7
-0.4
-0.4
+0.1
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.2
+0.3
-1.5
+0.1
carbon source
L-Proline (C)
-0.2
+0.1
+0.5
-1.1
-0.2
carbon source
L-Malic (C)
-0.2
+0.3
-0.3
-0.6
+0.1
in planta
apoplastic; Green bean; 6 days
-0.1
+0.4
+0.1
-0.9
-0.0
stress
KB with Trimethoprim 125 ug/ml
+0.1
-0.4
+0.4
-0.5
-0.1
in planta
epiphytic; Lima bean
+0.1
+0.2
-0.1
-0.9
+0.3
carbon source
Succinic Acid (C)
-0.4
+0.5
+0.0
-0.6
+0.2
in planta
apoplastic; Green bean; 13 days
+0.7
-1.1
+0.7
-0.2
-0.1
stress
KB with Diallyl sulfide 10 mM
-0.1
+0.4
+0.9
-0.5
-0.1
stress
KB with dihydrojasmonic, methyl ester 10 mM
-0.4
+0.6
+0.3
+0.2
-0.1
kb
KB
-0.0
+0.5
-0.4
+0.7
-0.2
stress
KB with capsaicin 0.125 mg/ml
-0.1
+0.5
-0.2
+0.7
+0.0
stress
KB with Totarol 10 mM
-0.4
+0.6
+0.2
+0.6
-0.1
stress
KB with Nitrofurantoin 0.25 mg/ml
-0.4
-0.0
+0.4
+1.1
+0.0
stress
KB with Harmol 10 mM
-0.1
+0.8
+0.4
+0.3
-0.0
stress
KB with Isoliquiritigenin 10 mM
-0.3
+0.7
+0.8
+0.5
-0.1
stress
KB with Palmatine chloride 10 mM
-0.0
+0.5
+0.6
+0.7
-0.1
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.2
+0.2
+0.6
+0.7
+0.0
in planta
epiphytic; Lima bean
+0.2
+0.3
+0.7
+0.4
+0.2
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.2
+0.6
+0.6
+0.4
-0.0
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