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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3603 and Psyr_3604 are separated by 32 nucleotides
Psyr_3604 and Psyr_3605 are separated by 6 nucleotides
Psyr_3605 and Psyr_3606 are separated by 38 nucleotides
Psyr_3606 and Psyr_3607 are separated by 138 nucleotides
Psyr_3603: Psyr_3603 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,284,869 to 4,285,858
_3603
Psyr_3604: Psyr_3604 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 4,285,891 to 4,287,072
_3604
Psyr_3605: Psyr_3605 - Trimethylamine-N-oxide reductase (cytochrome c), at 4,287,079 to 4,289,349
_3605
Psyr_3606: Psyr_3606 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,289,388 to 4,290,359
_3606
Psyr_3607: Psyr_3607 - transcriptional regulator, LysR family, at 4,290,498 to 4,291,406
_3607
Group
Condition
Psyr
_3603
Psyr
_3604
Psyr
_3605
Psyr
_3606
Psyr
_3607
aphid
library passed through aphids in food, 72 hours
-0.1
-1.4
-0.1
+0.1
-0.3
in planta
apoplastic; Green bean; 13 days
+0.1
-1.4
-0.1
+0.1
-0.4
in planta
epiphytic; Green bean
-0.2
-1.5
-0.0
+0.2
+0.1
stress
KB with Curcumin 10 mM
-0.0
-1.0
-0.1
-0.2
+0.1
in planta
epiphytic; Lima bean
-0.2
-1.1
-0.2
-0.2
+0.4
in planta
epiphytic; Lima bean
-0.3
-1.1
+0.0
+0.1
+0.3
stress
KB with Cotarnine Chloride 10 mM
-0.0
-1.3
+0.0
+0.2
+0.2
in planta
epiphytic; Green bean
-0.3
-1.1
+0.4
+0.1
+0.1
stress
KB with Acridine orange 62.5 ug/ml
-0.1
-0.4
+0.2
-0.6
+0.2
in planta
apoplastic; Lima bean
-0.3
-0.4
+0.3
+0.1
-0.1
stress
KB with Resveratrol 10 mM
-0.3
-0.0
-0.1
-0.4
+0.4
stress
KB with Dihydrodehydroerosone 10 mM
+0.2
-0.9
-0.2
+0.2
+0.3
stress
KB with Strychnine Sulfate 10 mM
+0.1
-1.0
-0.1
+0.5
+0.2
stress
KB with Pterin-6-Carboxylic Acid 10 mM
+0.1
-0.6
-0.2
+0.2
+0.2
stress
KB with Rifampicin 0.1 mg/ml
+0.2
-0.5
-0.0
+0.4
-0.2
in planta
apoplastic, sonication recovery; Green bean
+0.3
-0.6
+0.2
+0.2
-0.2
in planta
apoplastic; Pepper
-0.3
-0.2
+0.2
+0.4
-0.2
stress
KB with Naringin 250 ug/ml
-0.2
+0.5
-0.0
-0.4
+0.2
stress
KB with Plumbagin 10 mM
-0.2
+0.3
-0.0
-0.4
+0.5
stress
KB with Sparassol 10 mM
+0.1
-0.6
-0.1
+0.6
+0.1
stress
KB with 2',2'-Bisepigallocatechin Digallate 10 mM
+0.3
-0.5
-0.2
+0.3
+0.4
stress
KB with Avocadyne 10 mM
+0.3
-0.4
+0.0
+0.1
+0.4
in planta
apoplastic; Pepper
-0.2
-0.2
+0.3
+0.5
+0.0
stress
KB with Conessine 10 mM
+0.2
+0.4
-0.2
-0.2
+0.3
in planta
apoplastic; Lima bean
+0.1
+0.8
-0.0
-0.4
+0.2
in planta
apoplastic; Pepper
+0.1
-0.3
+0.4
+0.1
+0.4
carbon source
4-hydroxybutyric (C)
-0.1
+0.1
-0.3
+0.7
+0.4
in planta
apoplastic, grinding recovery; Green bean
-0.1
+1.0
+0.5
-0.2
-0.0
carbon source
Sucrose (C)
+0.1
+0.5
-0.0
+0.7
+0.1
in planta
apoplastic, grinding recovery; Green bean
+0.3
+1.4
+0.2
-0.0
-0.5
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