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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3532 and Psyr_3533 are separated by 1 nucleotides
Psyr_3533 and Psyr_3534 are separated by 162 nucleotides
Psyr_3534 and Psyr_3535 are separated by 117 nucleotides
Psyr_3535 and Psyr_3536 overlap by 31 nucleotides
Psyr_3532: Psyr_3532 - PAS, at 4,209,228 to 4,211,303
_3532
Psyr_3533: Psyr_3533 - conserved hypothetical protein, at 4,211,305 to 4,211,628
_3533
Psyr_3534: Psyr_3534 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 4,211,791 to 4,213,680
_3534
Psyr_3535: Psyr_3535 - conserved hypothetical protein, at 4,213,798 to 4,214,592
_3535
Psyr_3536: Psyr_3536 - hypothetical protein, at 4,214,562 to 4,214,981
_3536
Group
Condition
Psyr
_3532
Psyr
_3533
Psyr
_3534
Psyr
_3535
Psyr
_3536
in planta
apoplastic; Pepper
-0.4
N.D.
-0.3
-0.3
-0.2
in planta
apoplastic, grinding recovery; Green bean
+0.1
N.D.
-0.4
-0.2
-0.6
stress
KB with Mitomycin C 0.625 ug/ml
-0.1
N.D.
-0.3
-0.2
-0.4
nophagecontrol
TIme6-nophage
-0.2
N.D.
-0.1
-0.2
-0.4
in planta
apoplastic; Pepper
-0.0
N.D.
+0.1
-0.0
-1.0
in planta
apoplastic; Pepper
-0.1
N.D.
+0.2
-0.3
-0.6
stress
KB with Ferulic Acid 180 ug/ml
-0.1
N.D.
-0.3
-0.0
-0.4
in planta
apoplastic; Pepper
-0.3
N.D.
-0.2
-0.4
+0.2
in planta
epiphytic; Lima bean
-0.5
N.D.
-0.1
-0.1
+0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.3
N.D.
-0.1
-0.2
-0.5
stress
KB with Fusaric 250 ug/ml
+0.2
N.D.
-0.3
+0.0
-0.4
in planta
apoplastic, chopping recovery; Green bean
-0.3
N.D.
+0.2
-0.4
+0.1
in planta
apoplastic, sonication recovery; Green bean
-0.3
N.D.
+0.4
+0.3
-0.7
in planta
apoplastic; Lima bean
+0.0
N.D.
+0.3
-0.3
-0.4
stress
KB with Acridine orange 62.5 ug/ml
+0.3
N.D.
-0.3
-0.1
-0.2
in planta
epiphytic; Green bean
-0.3
N.D.
-0.3
+0.2
+0.2
stress
KB with Phloretin 250 ug/ml
-0.1
N.D.
+0.0
+0.4
-0.4
stress
KB with Isovanillin 10 mM
+0.2
N.D.
-0.1
+0.1
-0.4
in planta
apoplastic; Green bean; 13 days
+0.1
N.D.
-0.4
-0.3
+0.4
in planta
apoplastic, sonication recovery; Green bean
-0.3
N.D.
+0.6
+0.2
-0.6
aphid
library passed through aphids in food, 72 hours
-0.0
N.D.
+0.1
+0.3
-0.4
stress
KB with Paclitaxel 10 mM
-0.2
N.D.
-0.2
+0.1
+0.3
stress
KB with Nalidixic 12.5 ug/ml
+0.2
N.D.
-0.2
+0.3
-0.1
stress
KB with Isoliquiritigenin 10 mM
-0.3
N.D.
-0.2
+0.4
+0.2
in planta
apoplastic, grinding recovery; Green bean
+0.3
N.D.
+0.5
-0.2
-0.5
kb
KB
+0.1
N.D.
-0.4
+0.2
+0.3
stress
KB with Terpene 10 mM
-0.3
N.D.
+0.2
+0.2
+0.1
stress
KB with Avocatin A 10 mM
-0.2
N.D.
+0.4
+0.3
+0.1
stress
KB with Nonanoic 10 mM
-0.1
N.D.
+0.2
+0.3
+0.2
aphid
library passed through aphids in food, 72 hours
+0.2
N.D.
+0.3
+0.6
+0.3
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