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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3492 and Psyr_3493 are separated by 100 nucleotides
Psyr_3493 and Psyr_3494 are separated by 235 nucleotides
Psyr_3494 and Psyr_3495 are separated by 63 nucleotides
Psyr_3495 and Psyr_3496 overlap by 4 nucleotides
Psyr_3492: Psyr_3492 - L-glutamine synthetase, at 4,160,858 to 4,162,201
_3492
Psyr_3493: Psyr_3493 - conserved hypothetical protein, at 4,162,302 to 4,163,213
_3493
Psyr_3494: Psyr_3494 - hypothetical protein, at 4,163,449 to 4,164,258
_3494
Psyr_3495: Psyr_3495 - ATP-binding region, ATPase-like protein, at 4,164,322 to 4,165,017
_3495
Psyr_3496: Psyr_3496 - TPR repeat:Response regulator receiver:Response regulator receiver:Response regulator receiver, at 4,165,014 to 4,166,615
_3496
Group
Condition
Psyr
_3492
Psyr
_3493
Psyr
_3494
Psyr
_3495
Psyr
_3496
in planta
epiphytic; Lima bean
-0.2
+0.0
-0.1
-1.4
+0.2
in planta
apoplastic, grinding recovery; Green bean
+0.4
-0.2
-0.4
-0.6
-0.3
in planta
apoplastic, sonication recovery; Green bean
+0.4
-0.6
-0.2
-0.9
+0.3
in planta
apoplastic, sonication recovery; Green bean
+0.2
-0.6
-0.2
-0.9
+0.5
carbon source
D-Mannose (C)
-1.0
+0.2
+0.1
-0.1
-0.1
in planta
apoplastic; Pepper
-0.3
+0.1
-0.2
-0.1
-0.3
stress
KB with Quercetin 360 ug/ml
-0.2
-0.3
-0.2
-0.3
+0.1
stress
KB with Acridine orange 62.5 ug/ml
+0.2
-0.1
-0.3
-0.6
-0.0
stress
KB with Nalidixic 12.5 ug/ml
+0.2
-0.5
-0.6
-0.0
+0.1
in planta
apoplastic; Lima bean
-0.2
-0.3
+0.1
-0.4
+0.2
in planta
apoplastic; Pepper
-0.1
+0.3
-0.0
-0.4
-0.3
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.2
-0.5
-0.3
+0.2
-0.1
in planta
apoplastic, chopping recovery; Green bean
-0.5
+0.0
-0.1
-0.2
+0.3
stress
KB with Mitomycin C 0.625 ug/ml
+0.2
-0.4
-0.3
-0.1
+0.1
stress
KB with Nitrofurantoin 125 ug/ml
+0.2
-0.2
-0.1
-0.6
+0.1
stress
KB with Aristolochic Acid 10 mM
+0.1
-0.5
-0.2
+0.2
+0.1
stress
KB with Veratric Acid 10 mM
-0.3
-0.2
-0.1
+0.2
+0.1
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
+0.1
-0.4
-0.2
-0.1
+0.3
stress
KB with Isovanillin 10 mM
+0.1
-0.5
-0.2
+0.0
+0.1
stress
KB with Anisodamine Hydrobromide () 10 mM
+0.2
-0.4
-0.3
-0.0
+0.3
carbon source
4-Aminobutyric (C)
-0.2
+0.3
+0.1
-0.1
-0.4
in planta
apoplastic, grinding recovery; Green bean
-0.1
+0.0
-0.1
-0.4
+0.4
stress
KB with Chrysophanol 10 mM
+0.2
-0.2
+0.2
-0.1
-0.2
stress
KB with Conessine 10 mM
+0.2
-0.2
+0.3
+0.2
-0.4
aphid
library passed through aphids in food, 72 hours
-0.1
+0.1
+0.1
+0.4
-0.3
kb
KB
+0.3
+0.1
+0.1
+0.1
-0.3
carbon source
L-Proline (C)
-0.1
+0.3
-0.1
+0.4
-0.3
in planta
epiphytic; Green bean
-0.1
+0.3
+0.2
-0.1
+0.3
stress
KB with Palmatine chloride 10 mM
+0.2
+0.2
+0.3
+0.2
-0.1
in planta
apoplastic; Green bean; 13 days
+0.3
+0.3
+0.2
+1.0
-0.7
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