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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3453 and Psyr_3454 are separated by 6 nucleotides
Psyr_3454 and Psyr_3455 overlap by 11 nucleotides
Psyr_3455 and Psyr_3456 are separated by 15 nucleotides
Psyr_3456 and Psyr_3457 overlap by 8 nucleotides
Psyr_3453: Psyr_3453 - flagellar protein FliJ, putative, at 4,116,431 to 4,116,880
_3453
Psyr_3454: Psyr_3454 - ATPase FliI/YscN, at 4,116,887 to 4,118,245
_3454
Psyr_3455: Psyr_3455 - Flagellar assembly protein FliH, at 4,118,235 to 4,119,053
_3455
Psyr_3456: Psyr_3456 - Flagellar motor switch protein FliG, at 4,119,069 to 4,120,085
_3456
Psyr_3457: Psyr_3457 - Flagellar FliF M-ring protein, at 4,120,078 to 4,121,862
_3457
Group
Condition
Psyr
_3453
Psyr
_3454
Psyr
_3455
Psyr
_3456
Psyr
_3457
aphid
library passed through aphids in food, 72 hours
-2.7
-2.3
-1.9
-1.3
-2.4
aphid
library passed through aphids in food, 72 hours
-2.4
-1.0
-1.1
-2.2
-1.7
aphid
library passed through aphids in food, 24 hours
-1.8
-1.5
-1.3
-1.5
-1.9
aphid
library passed through aphids in food, 72 hours
-1.1
-1.9
-1.3
-1.3
-2.0
aphid
library passed through aphids in food, 24 hours
-1.8
-1.4
-1.1
-1.5
-1.2
aphid
library passed through aphids in food, 24 hours
-1.2
-1.4
-1.3
-1.4
-1.4
aphid
library passed through aphids in food, 24 hours
-1.1
-1.3
-1.3
-1.5
-1.1
stress
KB with Palmatine chloride 10 mM
-0.4
-0.5
-0.4
-0.1
-0.3
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.4
-0.0
-0.5
-0.2
-0.5
in planta
apoplastic, sonication recovery; Green bean
+0.8
-0.3
-0.6
-0.1
-1.0
in planta
apoplastic, sonication recovery; Green bean
+0.9
-0.4
-0.6
-0.1
-0.5
stress
KB with Mitomycin C 0.625 ug/ml
-0.6
-0.4
+0.1
-0.2
+0.7
in planta
apoplastic; Green bean; 13 days
+0.1
+0.1
+0.8
-0.4
+0.4
in planta
epiphytic; Lima bean
+0.3
+0.4
+0.5
+0.3
+0.1
in planta
epiphytic; Green bean
+0.1
+0.3
+0.3
+0.4
+0.4
in planta
apoplastic; Pepper
+0.6
+0.5
+0.3
+0.4
-0.1
carbon source
L-Malic (C)
+0.4
+0.5
+0.3
+0.4
+0.2
in planta
epiphytic; Green bean
+0.4
+0.3
+0.6
+0.4
+0.3
carbon source
Citric Acid (C)
+0.3
+0.3
+0.3
+0.6
+0.3
in planta
apoplastic; Pepper
+0.4
+0.4
+0.2
+0.5
+0.5
in planta
apoplastic; Pepper
+0.5
+0.5
+0.5
+0.5
+0.1
in planta
epiphytic; Lima bean
+0.5
+0.3
+0.6
+0.8
+0.7
in planta
epiphytic; Lima bean
+0.7
+0.3
+0.6
+0.8
+0.7
carbon source
4-hydroxybutyric (C)
+0.3
+0.6
+0.4
+0.8
+1.0
in planta
apoplastic; Pepper
+1.3
+0.8
+1.0
+0.2
+0.6
in planta
epiphytic; Green bean
+0.7
+1.0
+1.1
+0.8
+0.9
in planta
apoplastic; Pepper
+1.3
+0.9
+1.1
+0.3
+0.8
in planta
epiphytic; Green bean
+0.6
+0.8
+1.3
+0.9
+1.0
in planta
Green bean; epiphytic
+0.8
+0.9
+0.9
+1.3
+1.0
in planta
Green bean; epiphytic
+0.9
+1.1
+0.9
+1.1
+1.1
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