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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3325 and Psyr_3326 overlap by 1 nucleotides
Psyr_3326 and Psyr_3327 are separated by 141 nucleotides
Psyr_3327 and Psyr_3328 are separated by 1 nucleotides
Psyr_3328 and Psyr_3329 are separated by 291 nucleotides
Psyr_3325: Psyr_3325 - fumarylacetoacetate hydrolase, at 3,976,500 to 3,977,795
_3325
Psyr_3326: Psyr_3326 - homogentisate 1,2-dioxygenase, at 3,977,795 to 3,979,099
_3326
Psyr_3327: Psyr_3327 - transcriptional regulator, IclR family, at 3,979,241 to 3,980,032
_3327
Psyr_3328: Psyr_3328 - GGDEF domain protein, at 3,980,034 to 3,981,680
_3328
Psyr_3329: Psyr_3329 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,981,972 to 3,984,170
_3329
Group
Condition
Psyr
_3325
Psyr
_3326
Psyr
_3327
Psyr
_3328
Psyr
_3329
in planta
Green bean; epiphytic
-0.5
-0.2
-0.5
-0.2
+0.1
in planta
apoplastic; Pepper
-0.4
-0.4
-0.0
-0.3
-0.2
in planta
apoplastic; Green bean; 6 days
-0.2
-0.1
-0.5
-0.2
-0.1
in planta
apoplastic; Green bean; 6 days
-0.2
+0.3
-0.7
-0.1
-0.3
kb
KB
-0.1
-0.3
-0.5
-0.2
+0.1
in planta
epiphytic; Green bean
-0.2
-0.2
-0.2
+0.0
-0.2
stress
KB with Mitomycin C 0.625 ug/ml
+0.0
-0.7
+0.3
-0.5
-0.0
stress
KB with Rotenone 0.25 mg/ml
-0.0
-0.4
-0.4
-0.1
+0.0
in planta
epiphytic; Green bean
-0.4
-0.2
-0.2
-0.0
+0.0
in planta
apoplastic; Lima bean
-0.0
-0.4
-0.4
-0.1
+0.2
carbon source
Sucrose (C)
+0.2
-0.1
-0.4
-0.2
-0.2
in planta
apoplastic, grinding recovery; Green bean
-0.8
+0.0
+0.0
-0.1
+0.1
in planta
apoplastic; Lima bean
+0.1
-0.3
-0.6
-0.1
+0.2
stress
KB with capsaicin 0.25 mg/ml
-0.3
-0.2
-0.2
-0.1
+0.1
stress
KB with Flavone 0.125 mg/ml
-0.1
-0.2
-0.3
-0.3
+0.2
in planta
Green bean; epiphytic
-0.4
-0.2
-0.0
-0.2
+0.2
carbon source
L-Proline (C)
+0.2
-0.2
-0.1
-0.1
-0.2
stress
KB with Rifampicin 0.1 mg/ml
-0.2
-0.2
-0.0
-0.3
+0.2
stress
KB with Isovanillin 10 mM
+0.2
-0.2
-0.4
-0.2
+0.0
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.1
+0.1
+0.1
-0.3
-0.2
in planta
apoplastic; Pepper
-0.2
-0.5
+0.5
-0.0
-0.1
in planta
apoplastic; Pepper
-0.2
-0.2
+0.3
+0.0
-0.1
in planta
apoplastic, sonication recovery; Green bean
-0.4
+0.3
-0.0
+0.0
+0.2
stress
KB with Novobiocin 250 ug/ml
+0.1
-0.3
+0.3
-0.0
-0.0
in planta
epiphytic; Lima bean
-0.0
+0.4
-0.4
+0.0
+0.2
in planta
apoplastic, sonication recovery; Green bean
-0.4
+0.5
+0.1
+0.0
+0.2
stress
KB with Nalidixic 12.5 ug/ml
+0.3
-0.1
+0.4
-0.2
+0.0
stress
KB with Plumbagin 10 mM
+0.0
+0.0
+0.6
+0.0
-0.2
in planta
apoplastic; Lima bean
+0.1
-0.1
+0.4
+0.1
+0.1
aphid
library passed through aphids in food, 72 hours
+0.5
+0.4
-0.5
+0.1
+0.3
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