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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3230 and Psyr_3231 are separated by 13 nucleotides
Psyr_3231 and Psyr_3232 are separated by 80 nucleotides
Psyr_3232 and Psyr_3233 are separated by 250 nucleotides
Psyr_3233 and Psyr_3234 are separated by 19 nucleotides
Psyr_3230: Psyr_3230 - Glycosyl transferase, group 1, at 3,868,831 to 3,870,060
_3230
Psyr_3231: Psyr_3231 - sugar transferase, at 3,870,074 to 3,871,483
_3231
Psyr_3232: Psyr_3232 - Polysaccharide export protein, at 3,871,564 to 3,872,652
_3232
Psyr_3233: Psyr_3233 - FMN reductase, at 3,872,903 to 3,873,484
_3233
Psyr_3234: Psyr_3234 - Lysine exporter protein (LYSE/YGGA), at 3,873,504 to 3,874,112
_3234
Group
Condition
Psyr
_3230
Psyr
_3231
Psyr
_3232
Psyr
_3233
Psyr
_3234
stress
KB with Harmol 10 mM
+0.2
-0.2
+0.2
-0.7
-0.3
no stress control
no stress control
-0.3
-0.0
-0.2
+0.4
-0.4
in planta
epiphytic; Green bean
+0.3
-0.1
-0.1
-0.8
+0.3
in planta
epiphytic; Lima bean
+0.0
+0.2
+0.2
-1.0
+0.3
in planta
epiphytic; Green bean
+0.4
+0.1
-0.2
-0.6
+0.3
stress
KB with capsaicin 0.125 mg/ml
+0.2
+0.1
+0.5
-0.4
+0.3
in planta
apoplastic; Pepper
+0.7
-0.3
-0.1
+0.1
+0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.5
-0.2
-0.1
-0.0
+0.6
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.2
+0.2
+0.3
-0.5
+0.4
in planta
apoplastic; Pepper
+0.6
-0.2
-0.2
+0.5
+0.0
stress
KB with Veratrine 10 mM
+0.3
+0.2
-0.1
+0.5
-0.2
stress
KB with Avocadyne 10 mM
+0.3
+0.1
+0.3
+0.6
-0.3
stress
KB with Conessine 10 mM
+0.4
+0.2
+0.4
+0.3
-0.2
stress
KB with Oxonitine 10 mM
+0.3
+0.3
-0.1
+0.3
+0.2
in planta
apoplastic; Lima bean
+0.4
+0.2
+0.1
+0.6
-0.3
stress
KB with Nitrofurantoin 125 ug/ml
+0.2
+0.3
+0.3
-0.1
+0.4
stress
KB with Gossypetin 10 mM
+0.4
-0.1
+0.2
+0.6
-0.0
stress
KB with Carbenicillin 250 ug/ml
+0.4
+0.3
+0.5
-0.4
+0.4
stress
KB with Acridine orange 62.5 ug/ml
+0.6
-0.1
-0.1
+0.3
+0.5
in planta
apoplastic; Lima bean
+0.2
+0.1
+0.4
+0.2
+0.4
stress
KB with Khayasin C 10 mM
+0.2
+0.3
+0.1
+0.5
+0.1
stress
KB with Trimethoprim 125 ug/ml
+0.3
+0.2
+0.4
+0.2
+0.1
stress
KB with Dimethyl Sulfoxide 1 vol%
+0.4
+0.1
+0.3
+0.4
+0.1
in planta
apoplastic; Lima bean
-0.2
+0.3
-0.1
+0.6
+0.7
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.0
+0.5
+0.6
+0.3
stress
KB with Avocatin A 10 mM
+0.3
+0.2
+0.3
+0.4
+0.2
kb
KB
+0.3
+0.3
+0.3
+0.4
+0.1
kb
KB
+0.4
+0.2
+0.3
+0.2
+0.3
stress
KB with Mitomycin C 0.625 ug/ml
+0.4
-0.4
+0.4
+0.4
+0.8
stress
KB with Ampicillin 15.6 ug/ml
+0.4
+0.3
+0.2
+0.3
+0.6
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