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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3093 and Psyr_3094 are separated by 645 nucleotides
Psyr_3094 and Psyr_3095 overlap by 4 nucleotides
Psyr_3095 and Psyr_3096 overlap by 4 nucleotides
Psyr_3096 and Psyr_3097 are separated by 106 nucleotides
Psyr_3093: Psyr_3093 - conserved hypothetical protein, at 3,708,294 to 3,708,989
_3093
Psyr_3094: Psyr_3094 - Periplasmic binding protein, at 3,709,635 to 3,710,648
_3094
Psyr_3095: Psyr_3095 - transport system permease protein, at 3,710,645 to 3,711,667
_3095
Psyr_3096: Psyr_3096 - ABC transporter, at 3,711,664 to 3,712,455
_3096
Psyr_3097: Psyr_3097 - Peptidase U32, at 3,712,562 to 3,714,568
_3097
Group
Condition
Psyr
_3093
Psyr
_3094
Psyr
_3095
Psyr
_3096
Psyr
_3097
in planta
apoplastic, grinding recovery; Green bean
-1.7
-0.0
-0.2
N.D.
-0.2
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.5
-0.1
-0.7
N.D.
-0.3
aphid
library passed through aphids in food, 72 hours
-0.1
-0.1
-1.2
N.D.
-0.1
stress
KB with Rotenone 0.125 mg/ml
-0.1
-0.2
-0.7
N.D.
-0.4
in planta
apoplastic, grinding recovery; Green bean
-0.9
-0.1
-0.2
N.D.
-0.2
in planta
apoplastic; Green bean; 13 days
-1.4
+0.2
-0.5
N.D.
+0.3
stress
KB with Helenine 10 mM
-0.5
-0.4
+0.1
N.D.
-0.5
stress
KB with Gossypetin 10 mM
-0.1
-0.5
-0.3
N.D.
-0.4
stress
KB with Avocatin A 10 mM
+0.0
-0.6
-0.5
N.D.
-0.3
stress
KB with Rifampicin 0.1 mg/ml
-0.4
+0.2
-0.6
N.D.
-0.3
aphid
library passed through aphids in food, 72 hours
-0.5
-0.2
-0.7
N.D.
+0.3
stress
KB with Palmatine chloride 10 mM
-0.5
-0.5
+0.2
N.D.
-0.4
carbon source
a-Ketoglutaric (C)
-0.6
-0.2
-0.5
N.D.
+0.5
stress
KB with L-alliin 10 mM
-0.1
-0.4
+0.3
N.D.
-0.5
no stress control
no stress control
+0.2
-0.6
-0.5
N.D.
+0.2
in planta
apoplastic; Lima bean
-1.1
+0.4
+0.0
N.D.
+0.0
stress
KB with Paeonol 10 mM
-0.4
-0.4
+0.4
N.D.
-0.2
carbon source
Citric Acid (C)
-0.7
+0.1
-0.2
N.D.
+0.3
stress
KB with Lupeol 10 mM
+0.6
-0.4
-0.5
N.D.
-0.3
carbon source
Citric Acid (C)
+0.4
+0.0
-0.8
N.D.
-0.1
carbon source
D-Mannose (C)
+0.5
-0.3
-0.4
N.D.
-0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.6
-0.4
+0.2
N.D.
+0.4
stress
KB with Avocadyne 10 mM
+0.3
-0.3
+0.3
N.D.
-0.4
stress
KB with Acridine orange 62.5 ug/ml
-0.7
-0.3
+0.1
N.D.
+0.9
in planta
epiphytic; Lima bean
+0.5
-0.8
+0.2
N.D.
+0.5
aphid
library passed through aphids in food, 72 hours
+0.1
+0.4
+0.3
N.D.
-0.4
stress
KB with Mitomycin C 0.625 ug/ml
-0.7
-0.2
+0.5
N.D.
+1.0
in planta
apoplastic, chopping recovery; Green bean
+0.6
+0.4
+0.3
N.D.
+0.2
in planta
apoplastic; Pepper
+0.7
-0.0
+0.6
N.D.
+0.2
in planta
apoplastic; Pepper
+1.0
-0.1
+0.5
N.D.
+0.2
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