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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3001 and Psyr_3002 are separated by 9 nucleotides
Psyr_3002 and Psyr_3003 are separated by 376 nucleotides
Psyr_3003 and Psyr_3004 are separated by 74 nucleotides
Psyr_3004 and Psyr_3005 are separated by 80 nucleotides
Psyr_3001: Psyr_3001 - Glycosyl transferase, family 2, at 3,597,093 to 3,597,746
_3001
Psyr_3002: Psyr_3002 - conserved hypothetical protein, at 3,597,756 to 3,598,796
_3002
Psyr_3003: Psyr_3003 - [Acyl-carrier protein] phosphodiesterase, at 3,599,173 to 3,599,781
_3003
Psyr_3004: Psyr_3004 - transcriptional regulator, LysR family, at 3,599,856 to 3,600,815
_3004
Psyr_3005: Psyr_3005 - 3-oxoadipate enol-lactonase, at 3,600,896 to 3,601,687
_3005
Group
Condition
Psyr
_3001
Psyr
_3002
Psyr
_3003
Psyr
_3004
Psyr
_3005
stress
KB with 4-hydroxychalcone 10 mM
-0.5
-0.2
+0.1
-0.2
-1.7
stress
KB with Emodin 10 mM
+0.2
-0.4
-0.3
-0.1
-1.1
in planta
epiphytic; Lima bean
+0.2
+0.4
+0.2
+0.6
-2.7
in planta
apoplastic, sonication recovery; Green bean
+0.2
-0.6
-0.7
-1.3
+1.2
stress
KB with Ginkgolide A 10 mM
+0.2
-0.2
-0.0
+0.5
-1.8
carbon source
a-Ketoglutaric (C)
+0.1
-0.3
-0.3
+0.4
-1.1
stress
KB with Erythromycin 25 ug/ml
+0.3
+0.2
-0.1
+0.1
-1.7
in planta
apoplastic, sonication recovery; Green bean
-0.1
-0.7
-0.7
-0.9
+1.2
aphid
library passed through aphids in food, 72 hours
-0.5
+0.2
+0.6
-0.0
-1.4
in planta
apoplastic, grinding recovery; Green bean
+0.2
+0.2
-0.1
+0.2
-1.5
stress
KB with Isoliquiritigenin 10 mM
+0.6
-0.5
-0.0
+0.5
-1.4
stress
KB with Conessine 10 mM
-0.0
+0.1
+0.1
+0.5
-1.3
stress
KB with Chloramphenicol 12.5 ug/ml
+0.4
+0.2
+0.1
-0.5
-0.9
stress
KB with Avocatin A 10 mM
+0.1
-0.6
+0.1
+0.8
-0.8
stress
KB with Curcumin 10 mM
+0.2
-0.0
+0.1
+0.6
-1.1
stress
KB with Prenyletin 10 mM
+0.6
-0.2
+0.1
+0.4
-1.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.3
-0.5
+0.4
-0.5
+0.4
stress
KB with Avocatin B 10 mM
+0.3
-0.4
+0.1
+0.6
-0.6
in planta
apoplastic; Pepper
-0.0
+0.2
-0.2
-0.9
+1.1
stress
KB with Isovanillin 10 mM
+0.4
-0.1
-0.1
-0.8
+0.7
stress
KB with Palmatine chloride 10 mM
+0.3
-0.3
+0.1
+0.7
-0.6
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.3
-0.5
+0.4
+0.5
-0.5
stress
KB with Flavone 0.25 mg/ml
-0.3
-0.1
-0.1
-0.5
+1.3
in planta
apoplastic, grinding recovery; Green bean
+1.0
-0.5
+0.1
-0.3
+0.3
in planta
apoplastic; Pepper
+0.2
+0.3
+0.2
-0.5
+0.9
stress
KB with Fusaric 250 ug/ml
+0.5
+0.1
-0.3
-0.1
+1.2
in planta
apoplastic; Lima bean
+0.7
+0.3
+0.1
+0.4
+0.6
in planta
apoplastic; Pepper
+0.5
+0.7
-0.0
+0.1
+1.4
in planta
apoplastic; Pepper
+0.8
+0.2
+0.3
-0.1
+1.9
stress
KB with Mitomycin C 0.625 ug/ml
+1.1
-0.7
+7.1
-0.2
-0.5
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