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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2995 and Psyr_2996 are separated by 17 nucleotides
Psyr_2996 and Psyr_2997 are separated by 156 nucleotides
Psyr_2997 and Psyr_2998 overlap by 4 nucleotides
Psyr_2998 and Psyr_2999 are separated by 13 nucleotides
Psyr_2995: Psyr_2995 - maltooligosyl trehalose synthase, at 3,589,162 to 3,591,945
_2995
Psyr_2996: Psyr_2996 - conserved hypothetical protein, at 3,591,963 to 3,592,364
_2996
Psyr_2997: Psyr_2997 - Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region, at 3,592,521 to 3,594,704
_2997
Psyr_2998: Psyr_2998 - conserved hypothetical protein, at 3,594,701 to 3,595,714
_2998
Psyr_2999: Psyr_2999 - LmbE-like protein, at 3,595,728 to 3,596,501
_2999
Group
Condition
Psyr
_2995
Psyr
_2996
Psyr
_2997
Psyr
_2998
Psyr
_2999
in planta
apoplastic; Green bean; 13 days
-0.4
N.D.
-0.9
-0.5
-0.5
in planta
apoplastic, sonication recovery; Green bean
-0.5
N.D.
-0.2
-0.1
-1.0
in planta
apoplastic, sonication recovery; Green bean
-0.6
N.D.
-0.5
-0.0
-0.6
in planta
apoplastic, grinding recovery; Green bean
-0.7
N.D.
-0.1
-0.4
-0.4
in planta
apoplastic; Green bean; 6 days
-0.5
N.D.
-0.3
-0.3
-0.4
in planta
apoplastic, chopping recovery; Green bean
-0.3
N.D.
-0.4
-0.5
-0.2
carbon source
D-Gluconic (C)
-0.2
N.D.
-0.2
-0.1
-0.8
in planta
apoplastic; Green bean; 6 days
-0.4
N.D.
-0.3
+0.1
-0.4
carbon source
D-Mannose (C)
-0.1
N.D.
-0.3
+0.3
-0.7
stress
KB with Paclitaxel 10 mM
-0.1
N.D.
-0.1
+0.2
-0.8
aphid
library passed through aphids in food, 72 hours
+0.1
N.D.
+0.5
-0.8
-0.4
stress
KB with Mitomycin C 0.625 ug/ml
-0.2
N.D.
-0.1
+0.5
-0.7
in planta
apoplastic; Lima bean
-0.1
N.D.
-0.4
-0.4
+0.4
carbon source
Citric Acid (C)
+0.0
N.D.
-0.4
+0.4
-0.5
in planta
epiphytic; Lima bean
-0.2
N.D.
-0.5
+0.1
+0.2
stress
KB with Plumbagin 10 mM
+0.0
N.D.
+0.6
+0.4
-1.4
in planta
apoplastic; Lima bean
-0.3
N.D.
-0.4
+0.4
+0.0
in planta
apoplastic; Lima bean
-0.3
N.D.
-0.6
+0.2
+0.5
in planta
apoplastic; Lima bean
-0.1
N.D.
-0.6
+0.4
+0.3
in planta
epiphytic; Lima bean
-0.3
N.D.
-0.3
+0.6
-0.0
stress
KB with Gambogic Acid 10 mM
+0.2
N.D.
-0.3
+0.5
-0.2
stress
KB with Gossypetin 10 mM
-0.2
N.D.
+0.1
+0.7
-0.4
stress
KB with Asiaticoside 10 mM
-0.1
N.D.
-0.2
+0.7
+0.2
in planta
Green bean; epiphytic
-0.1
N.D.
+0.0
-0.4
+1.3
stress
KB with Peucenin 10 mM
-0.0
N.D.
-0.2
+0.9
+0.2
in planta
Green bean; epiphytic
-0.2
N.D.
+0.2
-0.6
+1.5
stress
KB with D-Salicin 240 ug/ml
+0.1
N.D.
+0.1
+0.5
+0.4
in planta
apoplastic; Pepper
+0.1
N.D.
+0.1
-0.5
+1.6
stress
KB with Khayasin C 10 mM
+0.0
N.D.
+0.2
+0.6
+0.7
in planta
apoplastic; Pepper
-0.0
N.D.
+0.1
-0.2
+1.8
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