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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2704 and Psyr_2705 are separated by 73 nucleotides
Psyr_2705 and Psyr_2706 are separated by 64 nucleotides
Psyr_2706 and Psyr_2707 are separated by 127 nucleotides
Psyr_2707 and Psyr_2708 are separated by 145 nucleotides
Psyr_2704: Psyr_2704 - UDP-galactose 4-epimerase, at 3,285,422 to 3,286,450
_2704
Psyr_2705: Psyr_2705 - Helix-turn-helix motif protein, at 3,286,524 to 3,287,135
_2705
Psyr_2706: Psyr_2706 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 3,287,200 to 3,287,949
_2706
Psyr_2707: Psyr_2707 - transcriptional regulator, LysR family, at 3,288,077 to 3,288,964
_2707
Psyr_2708: Psyr_2708 - Rieske [2Fe-2S] region, at 3,289,110 to 3,290,174
_2708
Group
Condition
Psyr
_2704
Psyr
_2705
Psyr
_2706
Psyr
_2707
Psyr
_2708
carbon source
L-Malic (C)
-0.8
-0.6
-0.5
-0.0
+0.3
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.3
-0.4
-0.0
-0.0
-0.6
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.6
-0.3
+0.3
-0.1
-0.6
aphid
library passed through aphids in food, 72 hours
-0.2
-0.8
+0.3
-0.2
-0.0
in planta
apoplastic, chopping recovery; Green bean
-0.3
-0.3
+0.3
+0.2
-0.6
stress
KB with Fusaric 250 ug/ml
+0.1
-0.7
-0.0
+0.3
-0.3
stress
KB with Nalidixic 12.5 ug/ml
-0.3
-0.7
+0.4
+0.2
-0.4
stress
KB with Gambogic Acid 10 mM
-0.6
+0.3
+0.1
-0.2
+0.1
in planta
apoplastic, grinding recovery; Green bean
+0.2
-0.4
-0.4
+0.3
+0.1
stress
KB with Fusaric 250 ug/ml
-0.2
+0.2
+0.4
-0.3
-0.4
stress
KB with Rotenone 0.125 mg/ml
-0.4
+0.1
+0.4
+0.2
-0.4
in planta
epiphytic; Green bean
-0.5
+0.0
+0.3
+0.4
-0.3
stress
KB with Levodopa 10 mM
-0.5
-0.0
+0.4
+0.3
-0.2
in planta
apoplastic; Lima bean
+0.4
-0.2
-0.4
+0.3
-0.1
kb
KB
-0.1
-0.0
+0.6
+0.2
-0.5
carbon source
4-hydroxybutyric (C)
-0.5
+0.3
-0.1
+0.0
+0.5
stress
KB with Flavone 0.25 mg/ml
-0.3
+0.3
+0.5
+0.1
-0.2
in planta
apoplastic, sonication recovery; Green bean
+0.1
-0.7
+0.3
+0.3
+0.4
in planta
apoplastic; Pepper
+0.2
+0.5
-0.5
+0.3
+0.0
stress
KB with Lupeol 10 mM
-0.4
+0.3
+0.4
+0.3
-0.0
stress
KB with Helenine 10 mM
-0.4
+0.1
+0.2
+0.1
+0.6
carbon source
D-Mannose (C)
-0.1
+0.3
-0.1
+0.1
+0.7
stress
KB with Veratrine 10 mM
-0.2
+0.2
+0.2
+0.2
+0.5
stress
KB with Avocatin B 10 mM
-0.2
+0.2
+0.6
+0.6
-0.2
stress
KB with Acriflavine 7.75 ug/ml
+0.3
+1.0
+0.1
+0.3
-0.3
stress
KB with Ferulic Acid 180 ug/ml
+0.3
+0.3
+0.2
+0.3
+0.5
stress
KB with Plumbagin 10 mM
+0.3
+0.3
+0.3
+0.4
+0.4
stress
KB with Mitomycin C 0.625 ug/ml
-0.5
+1.3
+1.6
-0.2
-0.3
stress
KB with Acridine orange 62.5 ug/ml
+0.0
+0.7
+1.4
+0.3
+0.5
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.2
+1.8
+1.5
+0.3
+0.6
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