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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2684 and Psyr_2685 are separated by 67 nucleotides
Psyr_2685 and Psyr_2686 are separated by 94 nucleotides
Psyr_2686 and Psyr_2687 are separated by 142 nucleotides
Psyr_2687 and Psyr_2688 are separated by 108 nucleotides
Psyr_2684: Psyr_2684 - arginine deiminase, at 3,258,644 to 3,259,900
_2684
Psyr_2685: Psyr_2685 - ornithine carbamoyltransferase, at 3,259,968 to 3,260,978
_2685
Psyr_2686: Psyr_2686 - carbamate kinase, at 3,261,073 to 3,262,002
_2686
Psyr_2687: Psyr_2687 - PepSY-associated TM helix, at 3,262,145 to 3,263,539
_2687
Psyr_2688: Psyr_2688 - conserved hypothetical protein, at 3,263,648 to 3,264,058
_2688
Group
Condition
Psyr
_2684
Psyr
_2685
Psyr
_2686
Psyr
_2687
Psyr
_2688
stress
MBOA 2.5 mM
-0.4
-0.1
-0.3
-0.1
-0.5
in planta
apoplastic; Green bean; 13 days
-0.4
-0.2
-0.5
+0.3
-0.7
aphid
library passed through aphids in food, 72 hours
-0.1
-0.8
+0.1
-0.5
+0.0
stress
KB with Conessine 10 mM
-0.1
+0.2
-0.3
-0.1
-1.0
stress
DMSO
-0.5
-0.4
-0.2
-0.1
-0.1
stress
KB with Harmalol 10 mM
-0.1
-0.2
-0.1
-0.1
-0.7
no stress control
no stress control
-0.5
-0.3
-0.3
-0.1
+0.1
no stress control
no stress control
-0.3
-0.3
-0.3
-0.2
-0.0
no stress control
no stress control
-0.3
-0.3
-0.2
-0.0
-0.2
stress
MBOA 0.5 mM
-0.4
-0.3
-0.2
-0.2
-0.1
carbon source
L-Proline (C)
-0.1
+0.1
-0.5
-0.4
+0.2
stress
MBOA 1.2 mM
-0.3
-0.3
-0.2
-0.1
+0.1
stress
KB with Karanjin 10 mM
-0.1
+0.2
+0.0
-0.3
-0.4
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.0
+0.2
-0.1
+0.2
-0.9
carbon source
4-Aminobutyric (C)
-0.1
-0.2
-0.2
-0.3
+0.3
stress
KB with Erythromycin 25 ug/ml
+0.0
+0.1
+0.2
+0.0
-0.7
in planta
apoplastic; Green bean; 6 days
-0.2
-0.2
+0.1
-0.4
+0.3
in planta
apoplastic; Green bean; 6 days
-0.5
+0.1
+0.1
-0.3
+0.3
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.1
-0.1
-0.1
-0.4
+0.5
in planta
apoplastic, chopping recovery; Green bean
+0.2
-0.0
-0.2
+0.3
-0.4
in planta
apoplastic, grinding recovery; Green bean
+0.2
-0.3
-0.2
+0.2
+0.0
stress
KB with Chrysophanol 10 mM
-0.1
+0.3
-0.3
+0.3
-0.2
in planta
apoplastic; Lima bean
-0.1
+0.2
-0.3
-0.3
+0.6
in planta
apoplastic; Pepper
-0.2
-0.2
+0.4
+0.3
+0.1
stress
KB with Emodin 10 mM
-0.1
+0.1
-0.3
+0.2
+0.5
in planta
apoplastic, sonication recovery; Green bean
+0.2
-0.3
-0.1
-0.2
+0.8
in planta
apoplastic, sonication recovery; Green bean
+0.3
-0.5
-0.0
-0.0
+0.9
stress
KB with Isovanillin 10 mM
+0.1
+0.1
-0.1
+0.2
+0.6
stress
KB with Anisodamine Hydrobromide () 10 mM
+0.1
-0.1
-0.0
+0.2
+0.7
in planta
apoplastic; Lima bean
+0.1
+0.3
-0.1
+0.0
+0.6
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