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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2534 and Psyr_2535 are separated by 409 nucleotides
Psyr_2535 and Psyr_2536 are separated by 68 nucleotides
Psyr_2536 and Psyr_2537 are separated by 318 nucleotides
Psyr_2537 and Psyr_2538 overlap by 4 nucleotides
Psyr_2534: Psyr_2534 - Carboxymethylenebutenolidase, at 2,948,270 to 2,949,157
_2534
Psyr_2535: Psyr_2535 - GGDEF domain protein, at 2,949,567 to 2,950,619
_2535
Psyr_2536: Psyr_2536 - transcriptional regulator, LysR family, at 2,950,688 to 2,951,677
_2536
Psyr_2537: Psyr_2537 - conserved hypothetical protein, at 2,951,996 to 2,953,456
_2537
Psyr_2538: Psyr_2538 - Binding-protein-dependent transport systems inner membrane component, at 2,953,453 to 2,954,427
_2538
Group
Condition
Psyr
_2534
Psyr
_2535
Psyr
_2536
Psyr
_2537
Psyr
_2538
in planta
apoplastic; Pepper
-0.7
-0.1
-0.1
-1.6
-0.5
stress
KB with Mitomycin C 0.625 ug/ml
-1.6
-0.5
-0.2
-0.3
+0.0
stress
KB with Acridine orange 62.5 ug/ml
-0.4
-0.4
-0.5
-0.3
-0.9
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.6
-0.1
-0.5
-0.3
-0.8
in planta
apoplastic, sonication recovery; Green bean
-0.3
-0.8
-0.8
-0.6
+0.4
aphid
library passed through aphids in food, 24 hours
-0.5
-0.4
-0.4
+0.3
-0.9
in planta
apoplastic, sonication recovery; Green bean
+0.1
-0.3
-1.3
-0.7
+0.7
in planta
apoplastic, chopping recovery; Green bean
-1.1
-0.1
-0.8
+0.0
+0.4
stress
KB with Cimicifugoside H1 10 mM
+0.7
-0.7
-0.2
+0.2
-1.0
stress
KB with Matrine 10 mM
+0.1
-0.4
-0.8
+0.5
-0.2
carbon source
a-Ketoglutaric (C)
+0.4
+0.2
+0.4
-0.6
-0.9
in planta
epiphytic; Lima bean
-0.9
+0.7
+0.4
+0.2
-0.9
stress
KB with Quercetin 360 ug/ml
+0.6
-0.6
-0.9
+0.5
+0.1
stress
KB with Harmol 10 mM
-0.6
+0.5
+0.4
-0.0
-0.7
stress
KB with Novobiocin 250 ug/ml
-0.1
-0.7
+0.4
+0.8
-0.8
stress
KB with Conessine 10 mM
+0.5
-0.1
-0.0
+0.4
-1.0
stress
MBOA 2.5 mM
+0.3
+0.2
-0.1
+0.5
-1.1
in planta
apoplastic, grinding recovery; Green bean
+0.3
+1.0
-0.4
-0.9
+0.0
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
+0.3
-0.4
-0.8
+0.3
+0.6
in planta
apoplastic; Pepper
-0.3
+0.1
-0.5
+0.4
+0.9
in planta
apoplastic; Green bean; 13 days
-0.8
-0.2
-0.0
+0.8
+1.0
carbon source
L-Malic (C)
+1.0
+0.4
-0.2
+0.2
-0.4
in planta
apoplastic; Lima bean
+0.2
+0.4
-0.2
-0.5
+1.1
stress
KB with Theaflavin 10 mM
+0.5
-0.5
-0.0
+0.1
+1.1
stress
KB with Huperzine A 10 mM
+0.4
-0.6
+0.0
+0.4
+1.2
stress
KB with Nalidixic 12.5 ug/ml
-0.3
+0.1
-0.2
+0.7
+1.2
stress
KB with Acacetin 10 mM
+0.7
-0.3
+0.2
+0.4
+0.9
aphid
library passed through aphids in food, 72 hours
+1.0
+0.3
+1.0
-0.2
+0.1
stress
KB with Erythromycin 25 ug/ml
+0.4
+0.3
+0.2
+0.3
+1.1
stress
KB with 2',2'-Bisepigallocatechin Digallate 10 mM
+0.7
-0.1
+0.3
+0.3
+1.1
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