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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2447 and Psyr_2448 overlap by 7 nucleotides
Psyr_2448 and Psyr_2449 are separated by 50 nucleotides
Psyr_2449 and Psyr_2450 are separated by 55 nucleotides
Psyr_2450 and Psyr_2451 overlap by 4 nucleotides
Psyr_2447: Psyr_2447 - CheB methylesterase, at 2,834,720 to 2,835,334
_2447
Psyr_2448: Psyr_2448 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 2,835,328 to 2,836,509
_2448
Psyr_2449: Psyr_2449 - Response regulator receiver, at 2,836,560 to 2,836,988
_2449
Psyr_2450: Psyr_2450 - PAS, at 2,837,044 to 2,839,074
_2450
Psyr_2451: Psyr_2451 - KaiC, at 2,839,071 to 2,840,555
_2451
Group
Condition
Psyr
_2447
Psyr
_2448
Psyr
_2449
Psyr
_2450
Psyr
_2451
stress
KB with Acriflavine 7.75 ug/ml
-0.1
-0.9
-0.6
-0.5
-0.2
stress
KB with Novobiocin 250 ug/ml
-0.3
-0.1
-0.8
-0.2
-0.4
stress
KB with Nalidixic 12.5 ug/ml
-0.5
-1.2
+0.0
+0.0
+0.1
aphid
library passed through aphids in food, 24 hours
-0.1
-0.3
-0.8
-0.3
+0.0
stress
KB with Ampicillin 15.6 ug/ml
-0.4
-0.2
-0.7
+0.2
-0.0
stress
KB with Dimethyl Sulfoxide 1 vol%
-0.2
-0.6
-0.6
+0.2
+0.1
stress
KB with Methanol 5 vol%
-0.3
-0.3
-0.6
+0.1
+0.2
carbon source
L-Malic (C)
-0.0
-0.8
-0.5
+0.2
+0.1
in planta
epiphytic; Lima bean
-0.6
-0.2
-0.5
+0.0
+0.4
aphid
library passed through aphids in food, 72 hours
-0.2
+0.1
-0.6
-0.4
+0.2
carbon source
Sucrose (C)
-0.3
+0.7
-1.4
+0.2
+0.1
stress
KB with Dihydrodehydroerosone 10 mM
-0.3
-0.1
-0.7
+0.3
+0.1
carbon source
Citric Acid (C)
-0.6
+0.0
-0.6
+0.5
+0.0
stress
MBOA 1.2 mM
-0.5
+0.2
-0.4
+0.2
-0.0
carbon source
Succinic Acid (C)
-0.1
+0.1
-0.7
+0.2
+0.3
carbon source
Citric Acid (C)
+0.3
-0.3
+0.5
-0.2
-0.3
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.0
+0.4
-0.7
+0.3
-0.0
stress
KB with dihydrojasmonic, methyl ester 10 mM
-0.2
+0.4
+0.2
-0.4
+0.2
aphid
library passed through aphids in food, 72 hours
-0.4
-0.2
+0.4
-0.2
+0.6
stress
KB with Mitomycin C 0.625 ug/ml
-0.9
+0.2
+1.6
-0.2
-0.4
stress
KB with Nonanoic 10 mM
-0.1
+0.6
+0.2
-0.4
+0.1
stress
KB with Resveratrol 10 mM
-0.0
+0.2
+0.6
-0.4
+0.2
stress
KB with Avocadyne 10 mM
+0.2
+0.7
-0.2
-0.2
+0.1
stress
KB with Diallyl sulfide 10 mM
+0.1
+0.5
+0.3
-0.4
+0.2
in planta
apoplastic; Lima bean
-0.1
+0.4
-0.4
+0.6
+0.1
stress
KB with Curcumin 10 mM
-0.1
+0.4
+0.7
-0.3
+0.1
in planta
apoplastic; Green bean; 13 days
+0.7
-1.3
+0.7
+0.4
+0.3
stress
KB with Avocatin B 10 mM
+0.0
+0.4
+0.8
-0.2
+0.0
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
-0.1
+2.3
-0.3
-0.3
stress
KB with Acridine orange 62.5 ug/ml
-0.5
+1.2
+1.3
-0.0
-0.2
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