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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2140 and Psyr_2141 are separated by 19 nucleotides
Psyr_2141 and Psyr_2142 are separated by 225 nucleotides
Psyr_2142 and Psyr_2143 are separated by 259 nucleotides
Psyr_2143 and Psyr_2144 are separated by 102 nucleotides
Psyr_2140: Psyr_2140 - conserved hypothetical protein, at 2,500,040 to 2,500,228
_2140
Psyr_2141: Psyr_2141 - hypothetical protein, at 2,500,248 to 2,500,640
_2141
Psyr_2142: Psyr_2142 - FecR protein, at 2,500,866 to 2,501,894
_2142
Psyr_2143: Psyr_2143 - delta1-piperideine 2-carboxylate reductase, at 2,502,154 to 2,503,185
_2143
Psyr_2144: Psyr_2144 - conserved hypothetical protein, at 2,503,288 to 2,503,485
_2144
Group
Condition
Psyr
_2140
Psyr
_2141
Psyr
_2142
Psyr
_2143
Psyr
_2144
stress
KB with Anisodamine Hydrobromide () 10 mM
-1.3
-1.5
-0.1
-2.5
-0.8
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-1.1
-0.0
-0.2
-2.5
-0.7
stress
KB with Avocatin A 10 mM
-0.2
-1.0
-0.5
-0.9
-0.9
stress
KB with Solanesol 10 mM
-0.2
-0.5
-0.4
-1.6
-0.5
stress
KB with Chrysophanol 10 mM
-0.5
-0.8
-0.4
-0.8
-0.5
stress
KB with Fusaric 250 ug/ml
-0.8
-0.7
-0.0
-1.3
-0.3
stress
KB with Plumbagin 10 mM
-0.3
-0.5
-0.6
-1.1
-0.4
stress
KB with Chaulmoogric 10 mM
+0.1
-0.5
-0.2
-1.2
-1.0
stress
KB with Mitomycin C 0.625 ug/ml
+0.7
-0.4
-0.8
-2.1
-0.3
stress
KB with Palmatine chloride 10 mM
-0.5
-0.4
-0.5
-1.5
+0.1
stress
KB with dihydrojasmonic, methyl ester 10 mM
-0.1
-0.7
-0.2
-1.3
-0.5
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.1
-1.3
-0.5
-0.9
-0.2
stress
KB with Nalidixic 12.5 ug/ml
-0.4
-0.8
-0.5
-0.2
-0.7
stress
KB with Myricetin 10 mM
-0.2
-0.3
-0.2
-2.0
+0.1
stress
KB with Cantharidin 10 mM
-0.3
-1.2
+0.1
-1.0
+0.3
carbon source
Fumaric (C)
+0.1
-0.8
-0.4
-1.4
+0.5
stress
KB with Isoliquiritigenin 10 mM
+0.6
-1.2
-0.3
-0.2
-0.8
stress
KB with L-alliin 10 mM
-0.0
-0.9
-0.2
-1.1
+0.5
in planta
apoplastic, sonication recovery; Green bean
-0.5
-0.4
-0.0
+0.6
-1.3
carbon source
4-hydroxybutyric (C)
+0.2
-0.7
-0.2
-1.6
+0.8
in planta
epiphytic; Green bean
-0.6
-2.1
-0.0
+1.3
-0.1
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.1
-0.1
-0.3
-1.7
+0.7
aphid
library passed through aphids in food, 72 hours
-2.5
-0.9
-0.3
+1.6
+1.0
in planta
apoplastic; Green bean; 6 days
+0.4
+0.8
-0.4
-0.9
-0.7
in planta
apoplastic; Green bean; 6 days
+0.7
+0.5
-0.7
-0.9
-0.3
in planta
epiphytic; Green bean
-0.4
-1.1
-0.1
+1.2
+0.5
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.8
-0.1
-0.2
-0.8
+1.2
aphid
library passed through aphids in food, 72 hours
+0.0
-0.6
+0.3
+1.5
+0.2
stress
KB with Acridine orange 62.5 ug/ml
+1.5
-0.1
-0.2
-0.6
+1.0
in planta
apoplastic, grinding recovery; Green bean
-0.4
-0.5
+0.3
+1.0
+1.2
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