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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2109 and Psyr_2110 are separated by 165 nucleotides
Psyr_2110 and Psyr_2111 are separated by 52 nucleotides
Psyr_2111 and Psyr_2112 are separated by 338 nucleotides
Psyr_2112 and Psyr_2113 are separated by 87 nucleotides
Psyr_2109: Psyr_2109 - methyl-accepting chemotaxis sensory transducer, at 2,462,935 to 2,464,554
_2109
Psyr_2110: Psyr_2110 - diguanylate cyclase with PAS/PAC sensor, at 2,464,720 to 2,467,110
_2110
Psyr_2111: Psyr_2111 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C, at 2,467,163 to 2,468,629
_2111
Psyr_2112: Psyr_2112 - Protein with unknown function DUF469, at 2,468,968 to 2,469,312
_2112
Psyr_2113: Psyr_2113 - multi-sensor hybrid histidine kinase, at 2,469,400 to 2,473,020
_2113
Group
Condition
Psyr
_2109
Psyr
_2110
Psyr
_2111
Psyr
_2112
Psyr
_2113
stress
KB with Mitomycin C 0.625 ug/ml
-1.3
-0.0
-0.2
-2.4
-0.3
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.8
-0.2
-0.2
-2.5
-0.1
in planta
epiphytic; Lima bean
+0.1
+0.1
-0.5
-3.1
+0.1
stress
KB with Methanol 5 vol%
+0.0
-0.1
-0.4
-2.3
+0.0
stress
KB with Khayasin C 10 mM
-0.3
+0.0
-0.2
-2.3
+0.0
stress
KB with Fusaric 250 ug/ml
-0.2
-0.1
-0.4
-1.9
+0.1
stress
KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
-0.3
-0.0
-0.2
-1.8
-0.1
stress
KB with Nalidixic 12.5 ug/ml
-0.8
+0.1
-0.0
-1.5
-0.1
aphid
library passed through aphids in food, 24 hours
+0.2
-0.3
-0.1
-2.2
+0.1
stress
KB with Gambogic Acid 10 mM
-0.2
+0.2
-0.2
-2.0
-0.0
stress
KB with Ferulic Acid 180 ug/ml
-0.0
-0.3
-0.3
-1.6
+0.0
in planta
epiphytic; Green bean
-0.4
-0.3
+0.1
-1.7
+0.3
stress
KB with Fusaric 250 ug/ml
-0.0
-0.0
-0.2
-1.9
+0.1
carbon source
Citric Acid (C)
-0.1
+0.0
+0.3
-2.0
-0.1
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.5
+0.3
-0.0
-1.4
-0.3
stress
KB with Acridine orange 62.5 ug/ml
-0.8
-0.1
+0.1
-0.9
-0.1
kb
KB
-0.4
+0.0
-0.0
-1.4
+0.1
stress
KB with Avocatin A 10 mM
-0.1
+0.3
+0.0
-1.8
-0.1
stress
KB with Carbenicillin 250 ug/ml
-0.1
+0.2
-0.2
-1.5
-0.0
stress
KB with Novobiocin 250 ug/ml
-0.2
-0.1
-0.4
-1.0
+0.2
stress
KB with Naringin 250 ug/ml
+0.0
-0.1
-0.2
-1.4
+0.1
stress
KB with Dimethyl Sulfoxide 1 vol%
-0.6
+0.1
-0.1
-1.0
+0.2
stress
KB with Avocadene 10 mM
-0.3
+0.2
-0.2
-1.2
+0.1
stress
KB with Conessine 10 mM
-0.2
+0.5
+0.0
-1.4
-0.0
stress
KB with Estragole 10 mM
-0.3
+0.3
-0.2
-1.0
+0.1
in planta
apoplastic; Lima bean
+0.2
+0.3
-0.5
-0.8
+0.1
in planta
apoplastic; Green bean; 13 days
-0.0
+0.2
+0.4
-1.3
+0.2
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.6
+0.1
+0.1
+1.3
+0.0
in planta
apoplastic; Pepper
+0.1
+0.1
+0.2
+1.8
+0.1
in planta
apoplastic; Pepper
+0.2
-0.0
+0.1
+2.0
+0.2
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