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Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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all 193 experiments
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500 nt
Psyr_2107 and Psyr_2108 are separated by 587 nucleotides
Psyr_2108 and Psyr_2109 are separated by 514 nucleotides
Psyr_2109 and Psyr_2110 are separated by 165 nucleotides
Psyr_2110 and Psyr_2111 are separated by 52 nucleotides
Psyr_2107: Psyr_2107 - Ribosome modulation factor, at 2,459,365 to 2,459,580
_2107
Psyr_2108: Psyr_2108 - 23S rRNA m(2)G-2445 methyltransferase, at 2,460,168 to 2,462,420
_2108
Psyr_2109: Psyr_2109 - methyl-accepting chemotaxis sensory transducer, at 2,462,935 to 2,464,554
_2109
Psyr_2110: Psyr_2110 - diguanylate cyclase with PAS/PAC sensor, at 2,464,720 to 2,467,110
_2110
Psyr_2111: Psyr_2111 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C, at 2,467,163 to 2,468,629
_2111
Group
Condition
Psyr
_2107
Psyr
_2108
Psyr
_2109
Psyr
_2110
Psyr
_2111
in planta
apoplastic, grinding recovery; Green bean
-0.9
-0.1
-0.6
-0.2
-0.2
in planta
apoplastic, grinding recovery; Green bean
-1.7
+0.1
+0.1
+0.0
-0.3
in planta
apoplastic; Green bean; 6 days
-0.6
-0.0
-0.6
-0.0
-0.4
in planta
apoplastic; Lima bean
-0.0
-0.6
-0.2
+0.1
-0.8
stress
KB with Erythromycin 25 ug/ml
-0.7
-0.3
-0.4
+0.1
-0.1
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.7
+0.1
-0.6
+0.1
+0.1
in planta
apoplastic, sonication recovery; Green bean
-1.0
+0.2
-0.0
+0.0
-0.3
in planta
epiphytic; Green bean
-0.0
-0.7
-0.2
-0.3
+0.1
in planta
apoplastic; Pepper
-0.8
-0.4
-0.0
+0.3
-0.0
in planta
apoplastic; Green bean; 6 days
-0.4
+0.2
-0.3
+0.2
-0.5
in planta
apoplastic; Lima bean
-0.4
-0.4
+0.2
+0.1
-0.4
carbon source
Citric Acid (C)
-0.9
-0.0
-0.1
+0.0
+0.3
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.4
+0.1
-0.5
+0.3
-0.0
in planta
apoplastic, sonication recovery; Green bean
-0.8
+0.1
+0.2
+0.3
-0.3
in planta
apoplastic, chopping recovery; Green bean
-0.5
+0.4
-0.1
+0.1
-0.3
in planta
apoplastic; Green bean; 13 days
-0.7
-0.3
-0.0
+0.2
+0.4
stress
KB with Gambogic Acid 10 mM
+0.3
-0.5
-0.2
+0.2
-0.2
stress
KB with Avocadyne 10 mM
-1.0
-0.0
+0.1
+0.3
+0.4
stress
KB with Mitomycin C 0.625 ug/ml
+0.4
+0.8
-1.3
-0.0
-0.2
stress
KB with Irigenin 10 mM
+0.5
-0.1
-0.4
+0.1
-0.3
stress
KB with Quinine Hdrochloride 10 mM
+0.4
-0.3
-0.2
+0.2
-0.2
stress
KB with Nalidixic 12.5 ug/ml
+0.1
+0.6
-0.8
+0.1
-0.0
in planta
Green bean; epiphytic
-0.7
+0.8
-0.1
+0.2
-0.1
stress
KB with Myricetin 10 mM
+0.6
-0.0
-0.4
+0.2
-0.3
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+1.0
+0.4
-0.8
-0.2
-0.2
stress
KB with Acridine orange 62.5 ug/ml
+0.6
+0.5
-0.8
-0.1
+0.1
in planta
apoplastic; Lima bean
-0.1
+0.5
+0.2
+0.3
-0.4
in planta
Green bean; epiphytic
-0.2
+0.8
+0.2
+0.0
-0.2
in planta
apoplastic; Lima bean
+0.6
+0.1
+0.2
+0.3
-0.5
aphid
library passed through aphids in food, 72 hours
+1.1
+0.3
+0.7
+0.2
-0.6
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