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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2027 and Psyr_2028 are separated by 127 nucleotides
Psyr_2028 and Psyr_2029 are separated by 69 nucleotides
Psyr_2029 and Psyr_2030 are separated by 45 nucleotides
Psyr_2030 and Psyr_2031 are separated by 115 nucleotides
Psyr_2027: Psyr_2027 - epoxide hydrolase, Serine peptidase, MEROPS family S33, at 2,351,440 to 2,352,294
_2027
Psyr_2028: Psyr_2028 - conserved hypothetical protein, at 2,352,422 to 2,353,252
_2028
Psyr_2029: Psyr_2029 - Protein of unknown function UPF0118, at 2,353,322 to 2,354,368
_2029
Psyr_2030: Psyr_2030 - Calcium-binding EF-hand, at 2,354,414 to 2,355,169
_2030
Psyr_2031: Psyr_2031 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 2,355,285 to 2,356,319
_2031
Group
Condition
Psyr
_2027
Psyr
_2028
Psyr
_2029
Psyr
_2030
Psyr
_2031
in planta
apoplastic; Green bean; 13 days
-0.2
-0.8
+0.2
-1.3
-2.2
in planta
apoplastic; Pepper
+0.0
-0.0
-0.3
-0.8
-1.4
aphid
library passed through aphids in food, 72 hours
-0.3
-0.0
+0.0
+0.0
-1.9
stress
KB with Quercetin 360 ug/ml
-0.1
-0.4
+0.1
-1.2
-0.2
in planta
apoplastic; Pepper
+0.1
+0.2
-0.4
-0.1
-1.5
stress
KB with Cotarnine Chloride 10 mM
+0.2
-0.2
-0.1
-0.9
-0.5
stress
KB with Novobiocin 250 ug/ml
-0.2
-0.5
+0.6
-0.9
-0.3
stress
KB with Piperic 10 mM
+0.1
+0.1
-0.6
-1.1
+0.3
in planta
apoplastic; Green bean; 6 days
+0.3
-0.1
+0.1
-0.3
-1.1
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
+0.2
+0.2
-0.4
-0.2
-1.0
stress
KB with Karanjin 10 mM
+0.3
+0.1
-0.1
-1.1
-0.4
stress
MBOA 0.5 mM
-0.2
+0.3
+0.2
-1.5
+0.3
in planta
apoplastic, grinding recovery; Green bean
+0.4
-0.2
+0.8
-0.0
-2.0
carbon source
4-hydroxybutyric (C)
-0.2
+0.3
-0.5
+0.7
-0.7
in planta
epiphytic; Lima bean
+0.3
+0.7
+0.3
-1.3
-0.2
stress
KB with Acridine orange 62.5 ug/ml
+0.4
+0.7
-0.3
-0.8
-0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.5
+0.6
+0.1
-0.8
-0.5
stress
KB with Gambogic Acid 10 mM
+0.2
+0.4
+0.4
-0.5
-0.4
nophagecontrol
TIme6-nophage
+0.2
+0.3
-0.4
+0.6
-0.4
stress
KB with Isovanillin 10 mM
+0.3
+0.5
-0.3
+0.3
-0.5
in planta
epiphytic; Green bean
-0.4
+0.3
+0.9
+0.1
-0.4
stress
KB with Nalidixic 12.5 ug/ml
+0.1
+0.2
-0.3
+1.3
-0.4
stress
KB with Mitomycin C 0.625 ug/ml
+0.1
+0.9
+0.4
+0.5
-1.0
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.1
+0.2
+1.1
-0.4
in planta
epiphytic; Green bean
-0.1
+0.1
+0.4
+1.3
-0.5
in planta
Green bean; epiphytic
+0.3
-0.3
+0.3
+0.4
+0.6
in planta
apoplastic, grinding recovery; Green bean
-0.1
-0.6
+1.6
+0.4
+0.2
kb
KB
+0.2
+0.5
-0.3
+0.9
+0.2
in planta
epiphytic; Lima bean
-0.3
+0.2
+0.4
+0.6
+0.5
in planta
epiphytic; Green bean
-0.1
+0.2
+0.5
+1.0
+0.3
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