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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2001 and Psyr_2002 are separated by 94 nucleotides
Psyr_2002 and Psyr_2003 are separated by 74 nucleotides
Psyr_2003 and Psyr_2004 are separated by 66 nucleotides
Psyr_2004 and Psyr_2005 are separated by 361 nucleotides
Psyr_2001: Psyr_2001 - conserved hypothetical protein, at 2,322,793 to 2,323,434
_2001
Psyr_2002: Psyr_2002 - Protein of unknown function UPF0153, at 2,323,529 to 2,323,786
_2002
Psyr_2003: Psyr_2003 - conserved hypothetical protein, at 2,323,861 to 2,324,454
_2003
Psyr_2004: Psyr_2004 - citrate synthase, at 2,324,521 to 2,325,810
_2004
Psyr_2005: Psyr_2005 - succinate dehydrogenase subunit C, at 2,326,172 to 2,326,546
_2005
Group
Condition
Psyr
_2001
Psyr
_2002
Psyr
_2003
Psyr
_2004
Psyr
_2005
stress
KB with Cantharidin 10 mM
N.D.
N.D.
-0.3
N.D.
N.D.
in planta
apoplastic; Pepper
N.D.
N.D.
-0.2
N.D.
N.D.
stress
KB with Levodopa 10 mM
N.D.
N.D.
+0.2
N.D.
N.D.
stress
KB with Hydrastine (1R, 9S) 10 mM
N.D.
N.D.
+0.2
N.D.
N.D.
no stress control
no stress control
N.D.
N.D.
+0.2
N.D.
N.D.
stress
KB with Diallyl sulfide 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
+0.3
N.D.
N.D.
in planta
apoplastic; Lima bean
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Chrysophanol 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Isovanillin 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Carbenicillin 250 ug/ml
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Ampicillin 15.6 ug/ml
N.D.
N.D.
+0.3
N.D.
N.D.
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Curcumin 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
carbon source
L-Malic (C)
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Plumbagin 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Fusaric 250 ug/ml
N.D.
N.D.
+0.3
N.D.
N.D.
in planta
epiphytic; Lima bean
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Dimethyl Sulfoxide 1.25 vol%
N.D.
N.D.
+0.3
N.D.
N.D.
in planta
apoplastic; Lima bean
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Veratrine 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with L-alliin 10 mM
N.D.
N.D.
+0.3
N.D.
N.D.
stress
KB with Mitomycin C 0.625 ug/ml
N.D.
N.D.
+0.3
N.D.
N.D.
kb
KB
N.D.
N.D.
+0.3
N.D.
N.D.
in planta
apoplastic; Green bean; 6 days
N.D.
N.D.
+0.4
N.D.
N.D.
stress
KB with dihydrojasmonic, methyl ester 10 mM
N.D.
N.D.
+0.4
N.D.
N.D.
stress
KB with Isoliquiritigenin 10 mM
N.D.
N.D.
+0.4
N.D.
N.D.
stress
KB with Novobiocin 250 ug/ml
N.D.
N.D.
+0.4
N.D.
N.D.
stress
KB with Benzalkonium Chloride 6.25 ug/ml
N.D.
N.D.
+0.4
N.D.
N.D.
stress
KB with Nalidixic 12.5 ug/ml
N.D.
N.D.
+0.5
N.D.
N.D.
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