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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1923 and Psyr_1924 overlap by 26 nucleotides
Psyr_1924 and Psyr_1925 are separated by 29 nucleotides
Psyr_1925 and Psyr_1926 overlap by 1 nucleotides
Psyr_1926 and Psyr_1927 are separated by 7 nucleotides
Psyr_1923: Psyr_1923 - hypothetical protein, at 2,196,210 to 2,197,433
_1923
Psyr_1924: Psyr_1924 - hypothetical protein, at 2,197,408 to 2,198,067
_1924
Psyr_1925: Psyr_1925 - diaminobutyrate aminotransferase apoenzyme, at 2,198,097 to 2,199,377
_1925
Psyr_1926: Psyr_1926 - hypothetical protein, at 2,199,377 to 2,200,087
_1926
Psyr_1927: Psyr_1927 - hypothetical protein, at 2,200,095 to 2,200,541
_1927
Group
Condition
Psyr
_1923
Psyr
_1924
Psyr
_1925
Psyr
_1926
Psyr
_1927
stress
KB with Nalidixic 12.5 ug/ml
-0.4
-1.0
-0.9
-0.3
-0.1
stress
KB with Novobiocin 250 ug/ml
-0.3
-1.5
-0.1
-0.4
-0.2
stress
KB with Mitomycin C 0.625 ug/ml
-0.4
-0.4
-0.6
-0.6
-0.2
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.4
-0.4
-0.4
-0.4
-0.4
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
-0.2
-0.7
-0.4
-0.3
stress
KB with Trimethoprim 125 ug/ml
-0.2
-0.8
-0.5
-0.4
+0.0
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.2
-0.6
-0.6
-0.3
-0.1
stress
KB with Dimethyl Sulfoxide 1 vol%
-0.2
-0.8
-0.2
-0.5
-0.0
stress
KB with Acridine orange 62.5 ug/ml
-0.0
-0.4
-0.8
-0.2
-0.3
stress
KB with Isovanillin 10 mM
-0.3
-0.7
-0.7
+0.1
-0.2
stress
KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
-0.2
-0.7
-0.2
-0.4
-0.2
stress
KB with Fusaric 250 ug/ml
+0.0
-0.8
-0.1
-0.5
-0.2
stress
KB with Fusaric 250 ug/ml
-0.1
-0.9
-0.6
+0.1
-0.0
in planta
apoplastic; Green bean; 13 days
-0.7
-0.2
-0.3
-0.5
+0.2
stress
KB with Aristolochic Acid 10 mM
-0.6
-0.2
-0.4
-0.0
-0.0
kb
KB
-0.1
-0.8
-0.2
-0.1
-0.0
stress
KB with Matrine 10 mM
-0.2
-0.6
-0.1
-0.3
+0.1
stress
KB with Nitrofurantoin 125 ug/ml
-0.2
-0.5
-0.3
-0.3
+0.2
carbon source
L-Proline (C)
-0.2
+0.1
-0.7
-0.1
-0.1
in planta
apoplastic; Green bean; 6 days
+0.1
-1.0
+0.1
-0.4
+0.4
carbon source
a-Ketoglutaric (C)
+0.1
-0.7
+0.1
-0.4
+0.0
in planta
apoplastic, chopping recovery; Green bean
+0.1
+0.0
+0.3
-0.7
-0.4
stress
KB with Curcumin 10 mM
-0.2
-0.7
+0.1
+0.5
-0.0
aphid
library passed through aphids in food, 72 hours
-0.1
+0.4
+0.1
-0.7
-0.1
stress
KB with Chloramphenicol 12.5 ug/ml
-0.0
-0.6
-0.2
+0.5
+0.0
in planta
epiphytic; Lima bean
-0.2
-0.0
-0.5
+0.5
-0.1
in planta
apoplastic; Lima bean
+0.2
+0.5
+0.1
-0.6
+0.1
aphid
library passed through aphids in food, 72 hours
+0.3
+0.2
+0.4
-0.2
+0.2
in planta
apoplastic, sonication recovery; Green bean
+0.0
+0.6
-0.2
+0.5
+0.2
in planta
apoplastic, grinding recovery; Green bean
+0.3
+0.6
+0.6
+0.6
+0.2
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