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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1906 and Psyr_1907 are separated by 46 nucleotides
Psyr_1907 and Psyr_1908 are separated by 149 nucleotides
Psyr_1908 and Psyr_1909 are separated by 103 nucleotides
Psyr_1909 and Psyr_1910 are separated by 198 nucleotides
Psyr_1906: Psyr_1906 - Protein of unknown function DUF214, at 2,181,325 to 2,182,569
_1906
Psyr_1907: Psyr_1907 - GTP cyclohydrolase I, at 2,182,616 to 2,183,530
_1907
Psyr_1908: Psyr_1908 - conserved hypothetical protein, at 2,183,680 to 2,183,949
_1908
Psyr_1909: Psyr_1909 - conserved hypothetical protein, at 2,184,053 to 2,184,661
_1909
Psyr_1910: Psyr_1910 - VacJ-like lipoprotein, at 2,184,860 to 2,185,561
_1910
Group
Condition
Psyr
_1906
Psyr
_1907
Psyr
_1908
Psyr
_1909
Psyr
_1910
stress
KB with Fusaric 250 ug/ml
N.D.
-1.4
N.D.
N.D.
-3.2
stress
KB with Fusaric 250 ug/ml
N.D.
-1.1
N.D.
N.D.
-2.7
stress
KB with Cantharidin 10 mM
N.D.
-3.3
N.D.
N.D.
-0.5
stress
KB with Trimethoprim 125 ug/ml
N.D.
-2.7
N.D.
N.D.
-1.0
stress
KB with Chloramphenicol 12.5 ug/ml
N.D.
-1.7
N.D.
N.D.
-2.0
stress
KB with Chrysin 10 mM
N.D.
-3.3
N.D.
N.D.
-0.3
in planta
apoplastic, chopping recovery; Green bean
N.D.
-2.7
N.D.
N.D.
-0.7
stress
KB with Oxymatrine 10 mM
N.D.
-2.9
N.D.
N.D.
-0.3
stress
KB with Cotarnine Chloride 10 mM
N.D.
-3.2
N.D.
N.D.
-0.1
in planta
apoplastic; Lima bean
N.D.
-2.2
N.D.
N.D.
-0.8
stress
KB with Palmatine chloride 10 mM
N.D.
-1.3
N.D.
N.D.
-1.7
in planta
epiphytic; Lima bean
N.D.
-0.8
N.D.
N.D.
-2.2
stress
KB with Dimethyl Sulfoxide 1 vol%
N.D.
-2.2
N.D.
N.D.
-0.8
stress
KB with Khayasin C 10 mM
N.D.
-2.2
N.D.
N.D.
-0.7
stress
KB with Ferulic Acid 180 ug/ml
N.D.
-2.1
N.D.
N.D.
-0.7
stress
KB with Carbenicillin 250 ug/ml
N.D.
-1.8
N.D.
N.D.
-1.0
stress
KB with Ampicillin 15.6 ug/ml
N.D.
-1.7
N.D.
N.D.
-1.0
stress
KB with Bergenin 10 mM
N.D.
-2.7
N.D.
N.D.
-0.0
stress
KB with Phloretin 250 ug/ml
N.D.
-2.4
N.D.
N.D.
-0.4
nophagecontrol
TIme6-nophage
N.D.
-0.6
N.D.
N.D.
-2.1
stress
KB with Quinine Hdrochloride 10 mM
N.D.
-2.2
N.D.
N.D.
-0.4
kb
KB
N.D.
-1.7
N.D.
N.D.
-0.9
stress
KB with Aristolochic Acid 10 mM
N.D.
-2.1
N.D.
N.D.
-0.5
mixed community
Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant
N.D.
-1.4
N.D.
N.D.
-1.1
stress
KB with Methanol 5 vol%
N.D.
-2.1
N.D.
N.D.
-0.5
stress
KB with Gambogic Acid 10 mM
N.D.
-2.5
N.D.
N.D.
-0.1
aphid
library passed through aphids in food, 72 hours
N.D.
+0.4
N.D.
N.D.
-2.7
aphid
library passed through aphids in food, 72 hours
N.D.
+0.6
N.D.
N.D.
-2.5
carbon source
Citric Acid (C)
N.D.
+0.8
N.D.
N.D.
-2.1
in planta
apoplastic, sonication recovery; Green bean
N.D.
-2.0
N.D.
N.D.
+0.8
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