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Cofit
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1882 and Psyr_1883 are separated by 215 nucleotides
Psyr_1883 and Psyr_1884 are separated by 569 nucleotides
Psyr_1884 and Psyr_1885 are separated by 75 nucleotides
Psyr_1885 and Psyr_1886 are separated by 130 nucleotides
Psyr_1882: Psyr_1882 - auxin-binding protein, putative, at 2,153,993 to 2,154,496
_1882
Psyr_1883: Psyr_1883 - Hypothetical protein, at 2,154,712 to 2,154,969
_1883
Psyr_1884: Psyr_1884 - CDS, at 2,155,539 to 2,155,718
_1884
Psyr_1885: Psyr_1885 - hypothetical protein, at 2,155,794 to 2,155,952
_1885
Psyr_1886: Psyr_1886 - Hemolysin-type calcium-binding region, at 2,156,083 to 2,157,570
_1886
Group
Condition
Psyr
_1882
Psyr
_1883
Psyr
_1884
Psyr
_1885
Psyr
_1886
stress
KB with Cantharidin 10 mM
+0.0
-0.5
-0.1
-1.6
-0.1
stress
KB with Khayasin C 10 mM
+0.3
-0.2
-0.2
-2.0
-0.0
in planta
apoplastic; Pepper
+0.2
-0.7
-0.8
-0.7
-0.0
stress
KB with Oxonitine 10 mM
+0.1
-0.1
-0.4
-1.4
-0.1
stress
KB with Methanol 5 vol%
+0.1
+0.4
-0.3
-1.7
-0.1
stress
KB with Pterin-6-Carboxylic Acid 10 mM
-0.2
+0.4
-0.1
-1.7
-0.0
in planta
apoplastic; Pepper
+0.1
-0.4
-0.9
-0.2
-0.1
stress
KB with Cyclopamine 10 mM
-0.0
+0.3
-0.5
-1.2
+0.0
stress
KB with Harmol 10 mM
+0.3
-0.2
+0.3
-1.8
+0.0
stress
KB with Veratric Acid 10 mM
+0.4
-0.2
-0.1
-1.4
-0.0
in planta
epiphytic; Lima bean
+0.1
+0.3
+0.2
-1.7
-0.2
stress
KB with Asiaticoside 10 mM
-0.3
+0.3
-0.0
-1.2
+0.0
stress
KB with Karanjin 10 mM
+0.3
-0.0
-0.3
-1.0
+0.0
stress
KB with capsaicin 0.25 mg/ml
+0.3
+0.5
-0.1
-1.5
-0.2
stress
KB with Avocadyne 10 mM
+0.4
-0.1
-0.1
-1.1
-0.1
in planta
apoplastic; Green bean; 13 days
-1.2
-0.2
+0.4
-0.2
+0.2
stress
KB with Fusaric 250 ug/ml
+0.1
+0.4
-0.2
-1.1
-0.1
stress
KB with Nalidixic 12.5 ug/ml
-0.0
+0.9
-0.0
-1.6
-0.0
stress
KB with Mexicanolide 10 mM
+0.1
+0.4
-0.2
-0.9
+0.1
in planta
apoplastic; Pepper
-0.5
+0.6
-0.6
+0.2
-0.1
stress
KB with Mitomycin C 0.625 ug/ml
-0.0
+0.9
-0.7
-0.2
-0.3
stress
KB with Naringin 250 ug/ml
-0.0
+0.7
-0.1
-0.7
-0.1
in planta
apoplastic; Pepper
+0.2
-1.7
-0.1
+1.3
+0.0
stress
KB with Aristolochic Acid 10 mM
+0.2
+0.2
+0.5
-1.0
-0.1
in planta
apoplastic; Green bean; 6 days
-0.7
+0.3
-0.5
+0.8
-0.0
in planta
apoplastic; Pepper
+0.2
-0.9
-0.1
+1.1
-0.0
stress
KB with Novobiocin 250 ug/ml
+0.8
+0.7
-0.3
-0.5
-0.2
in planta
epiphytic; Green bean
-0.6
+0.0
+0.2
+0.9
+0.2
in planta
epiphytic; Green bean
-0.1
+0.5
+0.3
+0.6
+0.1
aphid
library passed through aphids in food, 72 hours
+0.4
-0.0
+0.2
+1.3
-0.2
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