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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1868 and Psyr_1869 are separated by 165 nucleotides
Psyr_1869 and Psyr_1870 are separated by 12 nucleotides
Psyr_1870 and Psyr_1871 overlap by 4 nucleotides
Psyr_1871 and Psyr_1872 are separated by 55 nucleotides
Psyr_1868: Psyr_1868 - hypothetical protein, at 2,143,737 to 2,144,072
_1868
Psyr_1869: Psyr_1869 - Protein of unknown function DUF404:Protein of unknown function DUF407, at 2,144,238 to 2,145,647
_1869
Psyr_1870: Psyr_1870 - protein of unknown function DUF403, at 2,145,660 to 2,146,619
_1870
Psyr_1871: Psyr_1871 - Transglutaminase-like protein, at 2,146,616 to 2,147,446
_1871
Psyr_1872: Psyr_1872 - conserved hypothetical protein, at 2,147,502 to 2,147,873
_1872
Group
Condition
Psyr
_1868
Psyr
_1869
Psyr
_1870
Psyr
_1871
Psyr
_1872
in planta
apoplastic, chopping recovery; Green bean
-0.4
+0.1
-0.6
-0.8
-0.4
stress
KB with Veratrine 10 mM
-0.8
-0.1
+0.3
-0.3
-0.8
in planta
apoplastic, sonication recovery; Green bean
-0.0
+0.1
-0.7
-0.2
-0.7
in planta
apoplastic, sonication recovery; Green bean
+0.1
+0.0
-0.6
-0.1
-0.9
stress
KB with Emodin 10 mM
-0.2
+0.1
-0.0
-0.4
-0.9
stress
KB with Harmalol 10 mM
+0.4
+0.1
-0.2
-0.4
-0.7
aphid
library passed through aphids in food, 72 hours
-0.4
+0.2
-0.4
-0.3
+0.4
stress
MBOA 0.5 mM
+0.4
+0.1
+0.2
-0.2
-0.8
stress
KB with Totarol 10 mM
-0.3
-0.1
+0.3
-0.6
+0.5
stress
KB with Leucodin 10 mM
+0.4
-0.1
-0.1
+0.4
-0.7
aphid
library passed through aphids in food, 72 hours
+0.7
+0.3
-0.5
-0.3
-0.0
stress
KB with Gambogic Acid 10 mM
+0.5
-0.2
+0.1
+0.3
-0.5
stress
KB with Terpene 10 mM
-0.4
+0.0
+0.3
-0.3
+0.6
in planta
Green bean; epiphytic
-0.1
+0.1
-0.5
+0.5
+0.5
carbon source
Sucrose (C)
+0.9
-0.1
-0.0
+0.6
-0.7
in planta
epiphytic; Lima bean
-0.2
-0.2
-0.1
+0.5
+0.7
carbon source
4-hydroxybutyric (C)
+0.5
+0.0
+0.1
-0.5
+0.7
stress
KB with Chrysophanol 10 mM
-0.4
-0.1
+0.2
+0.4
+0.8
stress
KB with Dimethyl Sulfoxide 1 vol%
-0.2
-0.1
+0.3
+0.1
+1.0
in planta
epiphytic; Lima bean
-0.4
-0.3
+0.6
+0.5
+0.8
aphid
library passed through aphids in food, 72 hours
+0.3
-0.1
+0.3
+0.5
+0.4
in planta
apoplastic; Green bean; 6 days
-0.2
-0.1
+0.1
+0.4
+1.2
carbon source
Citric Acid (C)
+1.1
+0.0
+0.2
+0.3
-0.2
carbon source
a-Ketoglutaric (C)
+0.4
-0.1
+0.0
+0.2
+0.9
in planta
epiphytic; Green bean
+0.2
+0.1
+0.2
+0.4
+0.7
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.2
-0.2
+1.0
+0.6
+0.6
carbon source
4-Aminobutyric (C)
+0.9
-0.1
-0.1
+0.6
+0.6
stress
KB with Acridine orange 62.5 ug/ml
-0.0
-0.1
+0.9
+1.2
+0.2
in planta
apoplastic; Green bean; 13 days
+0.2
-0.2
+0.8
+0.6
+1.3
stress
KB with Mitomycin C 0.625 ug/ml
+0.7
-0.4
+0.7
+0.9
+1.1
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