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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1686 and Psyr_1687 are separated by 2 nucleotides
Psyr_1687 and Psyr_1688 are separated by 28 nucleotides
Psyr_1688 and Psyr_1689 are separated by 29 nucleotides
Psyr_1689 and Psyr_1690 are separated by 12 nucleotides
Psyr_1686: Psyr_1686 - Metallophosphoesterase, at 1,894,769 to 1,895,734
_1686
Psyr_1687: Psyr_1687 - Rhomboid-like protein, at 1,895,737 to 1,896,609
_1687
Psyr_1688: Psyr_1688 - Protein of unknown function DUF1315, at 1,896,638 to 1,896,898
_1688
Psyr_1689: Psyr_1689 - conserved hypothetical protein, at 1,896,928 to 1,897,728
_1689
Psyr_1690: Psyr_1690 - Peptidase M1, membrane alanine aminopeptidase, at 1,897,741 to 1,900,407
_1690
Group
Condition
Psyr
_1686
Psyr
_1687
Psyr
_1688
Psyr
_1689
Psyr
_1690
aphid
library passed through aphids in food, 72 hours
-1.0
-0.3
-1.6
-0.6
-0.3
aphid
library passed through aphids in food, 72 hours
-1.4
-1.5
+0.6
-0.3
-0.8
stress
KB with Arecoline Hydrobromide 10 mM
-0.4
-0.2
-1.8
-0.1
+0.1
in planta
apoplastic, grinding recovery; Green bean
-0.5
-0.0
+0.5
-2.0
-0.1
in planta
apoplastic; Green bean; 13 days
-0.1
-1.4
-2.1
+1.4
+0.1
aphid
library passed through aphids in food, 72 hours
-0.9
+0.2
-0.5
-0.6
-0.2
stress
KB with 2',2'-Bisepigallocatechin Digallate 10 mM
-0.3
-0.2
-1.4
-0.1
+0.0
stress
MBOA 0.5 mM
-0.4
+0.1
-1.4
-0.1
-0.1
stress
KB with Quinine Hdrochloride 10 mM
-0.4
-0.3
-1.3
+0.0
+0.1
stress
MBOA 1.2 mM
-0.3
-0.2
-1.3
+0.2
-0.2
stress
KB with 2',5'-Dihydroxy-4-Methoxychalcone 10 mM
-0.7
+0.1
-1.2
+0.1
+0.0
stress
KB with Oxymatrine 10 mM
-0.3
+0.1
-1.8
+0.2
+0.1
carbon source
4-hydroxybutyric (C)
-1.8
-0.0
+0.4
+0.4
-0.6
in planta
Green bean; epiphytic
+0.1
-0.5
-1.4
+0.3
+0.0
in planta
epiphytic; Green bean
+0.0
+0.4
-1.6
-0.3
-0.1
stress
KB with Chrysin 10 mM
-0.6
-0.7
-0.4
+0.3
+0.1
stress
KB with Leucodin 10 mM
-0.1
+0.2
-2.0
+0.5
+0.2
carbon source
L-Malic (C)
+0.7
-1.1
+0.5
-0.6
-0.3
in planta
apoplastic, grinding recovery; Green bean
-1.1
+0.3
+0.8
-0.5
-0.1
stress
KB with Veratrine 10 mM
+0.4
+0.2
-1.2
-0.0
+0.2
stress
KB with Paeonol 10 mM
+0.5
+0.3
-1.4
+0.3
-0.1
stress
KB with Mitomycin C 0.625 ug/ml
-1.0
-0.5
+0.6
+0.6
+0.1
stress
KB with Helenine 10 mM
+0.3
+0.5
-1.4
+0.5
-0.1
stress
KB with Avocatin B 10 mM
+0.1
+0.3
-1.0
+0.6
-0.1
in planta
apoplastic; Pepper
+0.2
-0.5
-0.6
+0.6
+0.3
in planta
apoplastic; Pepper
-0.2
+0.4
-1.0
+0.9
-0.0
stress
KB with Acridine orange 62.5 ug/ml
-0.4
-0.2
-0.4
+0.9
+0.2
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.2
+0.6
-1.3
+0.6
-0.2
stress
KB with Isoliquiritigenin 10 mM
-0.2
+0.6
-1.1
+0.8
-0.0
in planta
apoplastic, chopping recovery; Green bean
+1.1
-0.7
+0.3
+0.2
+0.3
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