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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1647 and Psyr_1648 are separated by 193 nucleotides
Psyr_1648 and Psyr_1649 are separated by 114 nucleotides
Psyr_1649 and Psyr_1650 overlap by 1 nucleotides
Psyr_1650 and Psyr_1651 are separated by 20 nucleotides
Psyr_1647: Psyr_1647 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 1,852,511 to 1,853,254
_1647
Psyr_1648: Psyr_1648 - Acyl carrier protein (ACP), at 1,853,448 to 1,853,690
_1648
Psyr_1649: Psyr_1649 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 1,853,805 to 1,855,049
_1649
Psyr_1650: Psyr_1650 - aminodeoxychorismate lyase apoprotein, at 1,855,049 to 1,855,864
_1650
Psyr_1651: Psyr_1651 - Protein of unknown function DUF175, at 1,855,885 to 1,857,000
_1651
Group
Condition
Psyr
_1647
Psyr
_1648
Psyr
_1649
Psyr
_1650
Psyr
_1651
stress
KB with Harmalol 10 mM
N.D.
N.D.
N.D.
-2.6
-0.2
stress
KB with Harmol 10 mM
N.D.
N.D.
N.D.
-2.0
-0.6
stress
KB with Ferulic Acid 180 ug/ml
N.D.
N.D.
N.D.
-2.5
-0.1
stress
KB with Acridine orange 62.5 ug/ml
N.D.
N.D.
N.D.
-1.9
-0.6
stress
KB with Trimethoprim 125 ug/ml
N.D.
N.D.
N.D.
-2.6
+0.2
stress
KB with Mitomycin C 0.625 ug/ml
N.D.
N.D.
N.D.
-1.8
-0.6
stress
KB with Nitrofurantoin 125 ug/ml
N.D.
N.D.
N.D.
-2.3
-0.1
kb
KB
N.D.
N.D.
N.D.
-2.2
+0.0
stress
KB with Dimethyl Sulfoxide 1.25 vol%
N.D.
N.D.
N.D.
-1.9
-0.2
stress
KB with Palmatine chloride 10 mM
N.D.
N.D.
N.D.
-1.7
-0.3
stress
KB with Nitrofurantoin 0.25 mg/ml
N.D.
N.D.
N.D.
-2.0
-0.0
in planta
apoplastic, sonication recovery; Green bean
N.D.
N.D.
N.D.
-1.7
-0.2
in planta
apoplastic, sonication recovery; Green bean
N.D.
N.D.
N.D.
-1.6
-0.2
nophagecontrol
TIme6-nophage
N.D.
N.D.
N.D.
-1.5
-0.3
kb
KB
N.D.
N.D.
N.D.
-1.7
-0.1
in planta
apoplastic; Green bean; 13 days
N.D.
N.D.
N.D.
-1.2
-0.5
stress
KB with Isoliquiritigenin 10 mM
N.D.
N.D.
N.D.
-1.2
-0.4
stress
KB with Rotenone 0.125 mg/ml
N.D.
N.D.
N.D.
-1.4
-0.1
stress
KB with Diallyl sulfide 10 mM
N.D.
N.D.
N.D.
-0.9
-0.5
stress
KB with Benzalkonium Chloride 6.25 ug/ml
N.D.
N.D.
N.D.
-1.1
-0.3
in planta
epiphytic; Lima bean
N.D.
N.D.
N.D.
-1.3
-0.1
stress
KB with Carbenicillin 250 ug/ml
N.D.
N.D.
N.D.
-1.2
-0.2
stress
KB with Terpene 10 mM
N.D.
N.D.
N.D.
-1.1
-0.2
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
N.D.
-0.3
-1.0
carbon source
L-Malic (C)
N.D.
N.D.
N.D.
+0.1
-1.4
stress
KB with capsaicin 0.25 mg/ml
N.D.
N.D.
N.D.
-1.3
+0.1
in planta
epiphytic; Green bean
N.D.
N.D.
N.D.
-1.0
+0.3
stress
KB with Plumbagin 10 mM
N.D.
N.D.
N.D.
-1.1
+0.9
in planta
apoplastic; Lima bean
N.D.
N.D.
N.D.
+0.8
-0.9
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
N.D.
+1.0
-0.7
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