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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1599 and Psyr_1600 are separated by 105 nucleotides
Psyr_1600 and Psyr_1601 are separated by 19 nucleotides
Psyr_1601 and Psyr_1602 are separated by 84 nucleotides
Psyr_1602 and Psyr_1603 are separated by 1 nucleotides
Psyr_1599: Psyr_1599 - C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A, at 1,797,634 to 1,799,748
_1599
Psyr_1600: Psyr_1600 - Zinc-containing alcohol dehydrogenase superfamily, at 1,799,854 to 1,800,816
_1600
Psyr_1601: Psyr_1601 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 1,800,836 to 1,801,489
_1601
Psyr_1602: Psyr_1602 - ABC transporter, at 1,801,574 to 1,802,563
_1602
Psyr_1603: Psyr_1603 - Binding-protein-dependent transport systems inner membrane component, at 1,802,565 to 1,803,362
_1603
Group
Condition
Psyr
_1599
Psyr
_1600
Psyr
_1601
Psyr
_1602
Psyr
_1603
carbon source
L-Malic (C)
-2.4
-1.2
+0.2
-0.3
-0.0
stress
KB with Berberine 250 ug/ml
-0.6
-0.4
-0.4
-0.1
-0.5
stress
KB with Nalidixic 12.5 ug/ml
-1.5
-0.2
-0.2
+0.2
-0.2
stress
KB with Fusaric 250 ug/ml
-1.1
-0.3
+0.1
+0.3
-0.2
carbon source
Citric Acid (C)
-1.2
-0.2
+0.3
-0.1
+0.0
stress
KB with Acriflavine 7.75 ug/ml
-0.8
+0.2
-0.4
+0.2
-0.1
in planta
apoplastic, sonication recovery; Green bean
-0.6
-0.1
+0.3
-0.3
-0.2
in planta
epiphytic; Lima bean
+0.2
-0.8
-0.3
+0.3
-0.0
in planta
apoplastic, sonication recovery; Green bean
-0.6
+0.1
+0.4
-0.3
-0.1
in planta
apoplastic; Pepper
-0.4
-0.4
+0.3
-0.2
+0.3
stress
KB with Erythromycin 25 ug/ml
-0.6
+0.3
-0.3
+0.4
-0.1
stress
KB with Novobiocin 250 ug/ml
-1.0
+0.3
+0.1
+0.3
+0.1
stress
KB with Fusaric 250 ug/ml
-0.5
-0.3
+0.3
+0.3
+0.1
stress
KB with Rifampicin 0.1 mg/ml
-0.3
-0.5
-0.1
+0.4
+0.3
stress
KB with Leucodin 10 mM
-0.5
+0.5
-0.1
+0.2
-0.2
in planta
apoplastic; Lima bean
-0.5
+0.6
-0.3
+0.2
-0.0
stress
KB with Khayasin C 10 mM
-0.4
+0.3
+0.2
-0.4
+0.2
stress
KB with Nitrofurantoin 125 ug/ml
-0.3
+0.5
-0.2
+0.5
-0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.5
+0.9
+0.1
-0.2
-0.0
stress
KB with Plumbagin 10 mM
-0.3
+0.7
-0.4
+0.3
+0.2
aphid
library passed through aphids in food, 72 hours
-0.3
-0.2
+0.4
+0.4
+0.3
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.6
+0.2
+0.3
+0.6
+0.0
stress
KB with Isoliquiritigenin 10 mM
-0.2
+0.9
-0.2
+0.3
-0.1
carbon source
Citric Acid (C)
+0.7
-0.1
+0.1
+0.4
-0.3
stress
KB with Mitomycin C 0.625 ug/ml
-0.6
+1.1
+0.1
+0.0
+0.1
in planta
apoplastic, grinding recovery; Green bean
-0.2
+0.4
+0.2
+0.6
-0.0
in planta
epiphytic; Green bean
-0.2
-0.1
+0.2
+0.8
+0.4
stress
KB with L-alliin 10 mM
-0.1
+1.1
-0.2
+0.5
-0.1
carbon source
Sucrose (C)
+0.8
-0.0
+0.3
+0.5
+0.1
in planta
epiphytic; Green bean
-0.1
+0.2
+0.4
+0.8
+0.4
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