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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1489 and Psyr_1490 are separated by 126 nucleotides
Psyr_1490 and Psyr_1491 are separated by 125 nucleotides
Psyr_1491 and Psyr_1492 are separated by 275 nucleotides
Psyr_1492 and Psyr_1493 are separated by 466 nucleotides
Psyr_1489: Psyr_1489 - hypothetical protein, at 1,677,287 to 1,677,565
_1489
Psyr_1490: Psyr_1490 - conserved domain protein, at 1,677,692 to 1,678,069
_1490
Psyr_1491: Psyr_1491 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,678,195 to 1,679,814
_1491
Psyr_1492: Psyr_1492 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 1,680,090 to 1,681,052
_1492
Psyr_1493: Psyr_1493 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,681,519 to 1,683,339
_1493
Group
Condition
Psyr
_1489
Psyr
_1490
Psyr
_1491
Psyr
_1492
Psyr
_1493
in planta
apoplastic, sonication recovery; Green bean
-1.7
N.D.
+0.2
+0.1
+0.0
in planta
apoplastic, grinding recovery; Green bean
-1.2
N.D.
-0.0
+0.1
-0.1
in planta
apoplastic, sonication recovery; Green bean
-1.2
N.D.
+0.0
+0.1
+0.1
stress
KB with Nalidixic 12.5 ug/ml
-0.5
N.D.
-0.3
+0.0
-0.1
carbon source
Citric Acid (C)
-0.1
N.D.
-0.2
-0.0
-0.5
in planta
apoplastic; Lima bean
-0.6
N.D.
-0.0
-0.3
+0.1
stress
KB with Cimicifugoside H1 10 mM
-0.7
N.D.
-0.0
-0.1
-0.0
stress
KB with Mitomycin C 0.625 ug/ml
-0.5
N.D.
-0.1
-0.2
+0.0
carbon source
4-hydroxybutyric (C)
-0.1
N.D.
-0.0
-0.0
-0.6
stress
KB with Aristolochic Acid 10 mM
-0.5
N.D.
-0.1
-0.1
+0.0
carbon source
Fumaric (C)
-0.4
N.D.
-0.1
-0.1
-0.1
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.5
N.D.
-0.2
-0.0
+0.1
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.2
N.D.
-0.2
-0.2
+0.1
carbon source
Glycerol (C)
-0.4
N.D.
-0.2
+0.1
-0.1
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.5
N.D.
-0.1
+0.1
+0.1
stress
KB with Palmatine chloride 10 mM
-0.4
N.D.
-0.0
+0.2
-0.1
in planta
apoplastic, grinding recovery; Green bean
-0.5
N.D.
-0.1
+0.3
+0.1
in planta
epiphytic; Lima bean
-0.5
N.D.
+0.1
+0.2
+0.1
stress
KB with Conessine 10 mM
+0.2
N.D.
-0.2
+0.2
-0.2
no stress control
no stress control
+0.4
N.D.
-0.1
-0.2
-0.1
stress
KB with Lupeol 10 mM
+0.3
N.D.
-0.2
+0.1
-0.1
in planta
apoplastic, chopping recovery; Green bean
+0.4
N.D.
-0.2
-0.0
-0.2
stress
KB with capsaicin 0.125 mg/ml
+0.4
N.D.
-0.1
-0.2
-0.0
in planta
apoplastic; Green bean; 6 days
+0.3
N.D.
+0.1
-0.2
-0.1
aphid
library passed through aphids in food, 72 hours
+0.2
N.D.
-0.2
+0.2
-0.1
stress
KB with Paclitaxel 10 mM
+0.7
N.D.
-0.1
-0.1
-0.2
kb
KB
+0.7
N.D.
-0.1
-0.1
-0.0
in planta
apoplastic; Lima bean
+0.6
N.D.
+0.1
-0.1
-0.0
stress
KB with Acriflavine 7.75 ug/ml
+0.4
N.D.
+0.0
+0.1
+0.2
stress
KB with Berberine 250 ug/ml
+0.4
N.D.
+0.2
+0.1
+0.2
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