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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1452 and Psyr_1453 are separated by 9 nucleotides
Psyr_1453 and Psyr_1454 are separated by 39 nucleotides
Psyr_1454 and Psyr_1455 are separated by 11 nucleotides
Psyr_1455 and Psyr_1456 overlap by 4 nucleotides
Psyr_1452: Psyr_1452 - conserved hypothetical protein, at 1,638,691 to 1,640,154
_1452
Psyr_1453: Psyr_1453 - conserved hypothetical protein, at 1,640,164 to 1,640,913
_1453
Psyr_1454: Psyr_1454 - hypothetical protein, at 1,640,953 to 1,643,112
_1454
Psyr_1455: Psyr_1455 - conserved hypothetical protein, at 1,643,124 to 1,643,630
_1455
Psyr_1456: Psyr_1456 - conserved hypothetical protein, at 1,643,627 to 1,644,184
_1456
Group
Condition
Psyr
_1452
Psyr
_1453
Psyr
_1454
Psyr
_1455
Psyr
_1456
stress
KB with Nalidixic 12.5 ug/ml
-0.1
-1.1
-0.3
-0.1
-0.2
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
+0.0
-0.1
-0.2
-1.0
-0.2
in planta
apoplastic; Pepper
-0.2
-0.1
-0.2
-0.2
-0.6
in planta
apoplastic; Lima bean
-0.1
-0.0
-0.2
-1.0
+0.2
carbon source
a-Ketoglutaric (C)
-0.2
-0.0
-0.0
-0.5
-0.3
stress
KB with Esculin Monohydrate 10 mM
-0.0
-0.0
-0.0
-0.8
-0.2
kb
KB
-0.1
-0.1
-0.1
-0.2
-0.4
stress
KB with Trimethoprim 125 ug/ml
-0.1
-0.0
-0.1
-0.3
-0.5
stress
KB with Quinine Hdrochloride 10 mM
-0.0
+0.1
-0.1
-0.5
-0.4
stress
KB with Bergenin 10 mM
+0.1
-0.1
-0.0
-0.7
-0.2
stress
KB with Rifampicin 0.1 mg/ml
-0.1
+0.1
-0.2
-0.4
-0.2
aphid
library passed through aphids in food, 72 hours
-0.0
+0.3
-0.1
-0.6
-0.5
stress
KB with Avocatin B 10 mM
-0.0
-0.1
-0.1
-0.8
+0.1
in planta
epiphytic; Lima bean
+0.2
+0.0
+0.0
-0.8
-0.3
in planta
apoplastic; Pepper
-0.3
-0.1
+0.1
-0.1
-0.4
stress
KB with Mitomycin C 0.625 ug/ml
-0.0
-0.3
-0.1
+0.1
-0.5
stress
KB with Leucodin 10 mM
+0.0
+0.2
-0.2
-0.4
-0.4
stress
MBOA 2.5 mM
+0.1
+0.1
-0.0
-0.7
-0.2
stress
KB with Rotenone 0.25 mg/ml
-0.2
-0.1
-0.2
+0.2
-0.3
stress
KB with Sinomenine 10 mM
+0.1
+0.1
+0.1
-0.6
-0.2
no stress control
no stress control
+0.1
+0.1
+0.0
-0.7
-0.1
in planta
apoplastic, grinding recovery; Green bean
+0.0
+0.2
+0.1
-1.1
+0.3
in planta
epiphytic; Green bean
+0.1
-0.6
+0.0
+0.5
-0.3
in planta
apoplastic, grinding recovery; Green bean
-0.1
+0.0
-0.4
+0.3
-0.1
aphid
library passed through aphids in food, 72 hours
+0.0
+0.3
+0.2
-0.0
-0.8
stress
KB with Avocadyne 10 mM
-0.1
-0.2
-0.1
+0.4
+0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.2
-0.2
-0.0
+0.9
-0.4
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.2
-0.2
+0.6
-0.1
aphid
library passed through aphids in food, 72 hours
+0.0
+0.3
+0.1
+0.5
+0.3
stress
KB with Acridine orange 62.5 ug/ml
-0.0
+0.0
+0.0
+1.4
-0.2
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