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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1445 and Psyr_1446 overlap by 4 nucleotides
Psyr_1446 and Psyr_1447 overlap by 4 nucleotides
Psyr_1447 and Psyr_1448 are separated by 15 nucleotides
Psyr_1448 and Psyr_1449 are separated by 19 nucleotides
Psyr_1445: Psyr_1445 - conserved hypothetical protein, at 1,635,290 to 1,636,213
_1445
Psyr_1446: Psyr_1446 - conserved hypothetical protein, at 1,636,210 to 1,636,878
_1446
Psyr_1447: Psyr_1447 - conserved hypothetical protein, at 1,636,875 to 1,637,267
_1447
Psyr_1448: Psyr_1448 - conserved hypothetical protein, at 1,637,283 to 1,637,651
_1448
Psyr_1449: Psyr_1449 - hypothetical protein, at 1,637,671 to 1,637,910
_1449
Group
Condition
Psyr
_1445
Psyr
_1446
Psyr
_1447
Psyr
_1448
Psyr
_1449
aphid
library passed through aphids in food, 72 hours
-0.1
-0.2
-2.9
+0.0
-0.4
in planta
apoplastic, chopping recovery; Green bean
+0.0
-0.1
-3.1
-0.1
+0.4
stress
KB with Acridine orange 62.5 ug/ml
-0.3
+0.2
-1.3
+0.3
-1.0
stress
KB with Trimethoprim 125 ug/ml
-0.0
-0.1
-1.3
-0.2
-0.2
carbon source
Glycerol (C)
-0.3
-0.1
-1.3
+0.3
-0.3
carbon source
D-Gluconic (C)
-0.2
-0.0
-0.6
-0.0
-0.8
carbon source
D-Mannose (C)
-0.2
-0.1
-1.5
+0.2
+0.1
aphid
library passed through aphids in food, 72 hours
+0.2
-0.1
-0.6
-0.7
-0.0
in planta
apoplastic; Green bean; 13 days
+0.0
-0.1
-1.8
+0.6
+0.0
carbon source
L-Proline (C)
+0.1
-0.0
-0.7
+0.4
-1.0
in planta
Green bean; epiphytic
+0.2
+0.1
-1.0
-0.2
+0.3
in planta
apoplastic, grinding recovery; Green bean
+0.1
-0.1
+0.6
-0.6
-0.2
stress
KB with Sinomenine 10 mM
-0.0
+0.0
+0.6
+0.2
-0.9
carbon source
Citric Acid (C)
-0.0
-0.1
-0.7
+0.1
+0.8
stress
KB with 4-hydroxychalcone 10 mM
+0.2
-0.0
+0.8
-0.4
-0.4
stress
KB with Asiaticoside 10 mM
-0.1
+0.0
+0.8
+0.3
-0.5
in planta
apoplastic; Green bean; 6 days
-0.2
+0.1
+0.3
-0.3
+0.7
stress
KB with Gossypetin 10 mM
+0.1
-0.0
+1.2
+0.0
-0.6
stress
KB with Brucine 10 mM
-0.0
+0.0
+0.6
+0.5
-0.4
in planta
apoplastic, sonication recovery; Green bean
-0.2
-0.2
+0.4
-0.3
+1.1
stress
KB with Avocatin A 10 mM
+0.3
-0.0
+1.1
-0.2
-0.2
stress
KB with Palmatine chloride 10 mM
+0.1
+0.0
+0.9
-0.4
+0.3
stress
KB with Oxymatrine 10 mM
-0.3
-0.0
+0.7
+0.4
+0.1
in planta
apoplastic, sonication recovery; Green bean
-0.1
-0.3
+0.7
-0.1
+0.9
stress
KB with Theaflavin 10 mM
-0.1
+0.1
+1.2
+0.5
-0.6
in planta
epiphytic; Green bean
-0.1
-0.0
+1.2
+0.3
-0.0
stress
KB with Ginkgolide A 10 mM
+0.2
+0.0
+1.2
-0.2
+0.4
stress
KB with L-alliin 10 mM
+0.1
+0.2
+1.0
+0.3
+0.1
in planta
apoplastic, grinding recovery; Green bean
-0.1
+0.0
+1.2
+0.1
+0.6
stress
KB with Fusaric 250 ug/ml
-0.0
+0.1
+0.9
+0.4
+0.6
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