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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1426 and Psyr_1427 overlap by 4 nucleotides
Psyr_1427 and Psyr_1428 are separated by 2 nucleotides
Psyr_1428 and Psyr_1429 are separated by 20 nucleotides
Psyr_1429 and Psyr_1430 overlap by 4 nucleotides
Psyr_1426: Psyr_1426 - conserved hypothetical protein, at 1,614,863 to 1,616,401
_1426
Psyr_1427: Psyr_1427 - conserved hypothetical protein, at 1,616,398 to 1,616,772
_1427
Psyr_1428: Psyr_1428 - conserved hypothetical protein, at 1,616,775 to 1,618,142
_1428
Psyr_1429: Psyr_1429 - Protein of unknown function DUF1527, at 1,618,163 to 1,619,101
_1429
Psyr_1430: Psyr_1430 - Protein of unknown function DUF1525, at 1,619,098 to 1,619,571
_1430
Group
Condition
Psyr
_1426
Psyr
_1427
Psyr
_1428
Psyr
_1429
Psyr
_1430
in planta
apoplastic; Pepper
+0.0
-0.2
-0.5
-0.5
-0.8
in planta
apoplastic, grinding recovery; Green bean
+0.1
-0.5
-0.1
-0.2
-0.9
in planta
apoplastic; Pepper
-0.0
-0.2
-0.4
-0.4
-0.2
stress
KB with Terpene 10 mM
-0.0
-0.4
-0.0
-0.3
-0.3
stress
KB with Chaulmoogric 10 mM
-0.2
-0.0
-0.1
-0.3
-0.4
stress
KB with Novobiocin 250 ug/ml
-0.2
-0.5
-0.2
+0.0
-0.2
kb
KB
-0.0
-0.4
-0.3
-0.2
-0.0
stress
KB with Conessine 10 mM
-0.1
-0.1
-0.3
-0.1
-0.5
in planta
apoplastic; Green bean; 6 days
+0.1
-0.1
-0.1
-0.2
-0.7
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.4
-0.3
+0.3
-1.2
in planta
epiphytic; Green bean
-0.1
-0.3
+0.3
-0.1
-0.7
carbon source
L-Malic (C)
-0.2
-0.5
-0.0
+0.1
-0.2
stress
KB with Flavone 0.25 mg/ml
+0.1
-0.5
-0.2
-0.1
-0.2
in planta
apoplastic; Green bean; 6 days
+0.1
-0.2
-0.2
-0.0
-0.5
in planta
apoplastic; Lima bean
-0.1
-0.3
-0.4
+0.1
-0.1
stress
KB with Fusaric 250 ug/ml
-0.2
-0.3
-0.4
-0.1
+0.2
carbon source
4-hydroxybutyric (C)
-0.0
-0.0
-0.0
+0.2
-0.8
stress
KB with Avocadyne 10 mM
-0.1
-0.4
-0.2
-0.2
+0.4
stress
KB with Quercetin 360 ug/ml
-0.3
+0.1
+0.0
-0.1
-0.4
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.4
-0.1
+0.4
-1.1
in planta
epiphytic; Green bean
-0.0
-0.3
+0.1
+0.2
-0.5
in planta
apoplastic, grinding recovery; Green bean
+0.1
+0.3
+0.1
-0.0
-0.7
stress
KB with Peucenin 10 mM
-0.1
+0.2
-0.4
+0.2
-0.1
in planta
apoplastic; Green bean; 13 days
+0.1
-0.4
-0.0
-0.4
+0.6
stress
KB with Lupeol 10 mM
-0.2
-0.0
-0.1
-0.3
+0.4
stress
KB with Acridine orange 62.5 ug/ml
-0.1
-0.4
-0.1
+0.0
+0.6
aphid
library passed through aphids in food, 72 hours
-0.1
+0.3
-0.2
+0.5
-0.3
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.5
+0.2
-0.0
+0.8
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.2
-0.1
-0.1
+0.2
+1.0
stress
KB with Mitomycin C 0.625 ug/ml
+0.3
-0.5
+0.0
+0.1
+1.0
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