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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1271 and Psyr_1272 are separated by 61 nucleotides
Psyr_1272 and Psyr_1273 are separated by 150 nucleotides
Psyr_1273 and Psyr_1274 are separated by 69 nucleotides
Psyr_1274 and Psyr_1275 overlap by 1 nucleotides
Psyr_1271: Psyr_1271 - ErfK/YbiS/YcfS/YnhG, at 1,437,672 to 1,438,235
_1271
Psyr_1272: Psyr_1272 - NUDIX hydrolase, at 1,438,297 to 1,438,848
_1272
Psyr_1273: Psyr_1273 - NUDIX hydrolase, at 1,438,999 to 1,439,595
_1273
Psyr_1274: Psyr_1274 - transferase hexapeptide repeat protein, at 1,439,665 to 1,440,189
_1274
Psyr_1275: Psyr_1275 - Protein of unknown function DUF1289, at 1,440,189 to 1,440,407
_1275
Group
Condition
Psyr
_1271
Psyr
_1272
Psyr
_1273
Psyr
_1274
Psyr
_1275
in planta
apoplastic, grinding recovery; Green bean
-0.4
-0.4
-0.5
-2.8
-0.5
in planta
apoplastic, grinding recovery; Green bean
+0.0
-0.5
-0.2
+0.3
-2.0
stress
KB with Novobiocin 250 ug/ml
-1.6
-0.4
-0.0
+0.4
-0.6
stress
KB with Nalidixic 12.5 ug/ml
-1.0
-0.2
-0.2
-0.5
-0.3
stress
KB with Mitomycin C 0.625 ug/ml
-1.1
-0.6
-0.5
-0.5
+0.7
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.9
-0.3
+0.1
-0.4
-0.2
in planta
apoplastic; Lima bean
-0.5
+0.3
-0.5
-0.4
-0.6
in planta
epiphytic; Lima bean
+0.1
-0.1
-0.5
+0.1
-1.1
in planta
apoplastic; Pepper
-0.4
+0.1
+0.5
-1.6
+0.1
carbon source
L-Malic (C)
-0.2
+0.0
+0.3
-0.8
-0.6
aphid
library passed through aphids in food, 72 hours
+0.4
+0.2
-0.5
-0.5
-0.5
stress
KB with Carnitine (Dl) Hydrochloride 10 mM
-0.4
-0.2
-0.2
-0.2
+0.6
stress
KB with Acridine orange 62.5 ug/ml
-0.3
-0.6
-0.3
+0.1
+0.6
in planta
apoplastic; Pepper
-0.2
+0.3
+0.6
-0.5
-0.6
in planta
apoplastic; Green bean; 13 days
+0.1
+0.1
-0.7
+1.0
-0.5
carbon source
Citric Acid (C)
-0.2
-0.1
+0.5
-0.6
+0.5
stress
KB with Fumarprotocetraric Acid 10 mM
-0.2
+0.1
+0.1
+0.9
-0.8
in planta
epiphytic; Green bean
-0.0
-0.4
-0.4
+1.0
+0.0
stress
KB with L-alliin 10 mM
-0.1
+0.2
+0.5
-0.6
+0.4
in planta
apoplastic, sonication recovery; Green bean
-0.2
+0.6
-0.2
+1.3
-0.5
stress
KB with Sclareolide 10 mM
+0.2
+0.4
+0.2
+0.5
-0.4
in planta
apoplastic; Lima bean
-0.1
-0.3
+0.1
+0.5
+0.9
stress
KB with Plumbagin 10 mM
-0.2
+1.1
+0.4
+0.6
-0.8
carbon source
4-hydroxybutyric (C)
+0.3
+0.0
+0.3
-0.2
+0.9
in planta
apoplastic, sonication recovery; Green bean
-0.4
+0.7
-0.5
+1.2
+0.3
stress
KB with Nonanoic 10 mM
-0.2
+0.3
+0.6
+0.5
+0.3
stress
KB with Gossypol-Acetic Acid Complex 10 mM
-0.0
-0.1
+0.3
+0.8
+0.5
in planta
epiphytic; Green bean
+0.3
-0.1
-0.2
+1.5
+0.1
stress
KB with Paclitaxel 10 mM
-0.1
+0.2
+0.6
+0.7
+0.5
stress
KB with Piperic 10 mM
+0.0
+0.5
+0.3
+0.4
+0.8
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