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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1243 and Psyr_1244 are separated by 96 nucleotides
Psyr_1244 and Psyr_1245 are separated by 33 nucleotides
Psyr_1245 and Psyr_1246 are separated by 26 nucleotides
Psyr_1246 and Psyr_1247 overlap by 1 nucleotides
Psyr_1243: Psyr_1243 - Protein of unknown function DUF528, at 1,399,648 to 1,399,848
_1243
Psyr_1244: Psyr_1244 - nucleoside diphosphate kinase, at 1,399,945 to 1,400,370
_1244
Psyr_1245: Psyr_1245 - 23S rRNA m(2)A-2503 methyltransferase, at 1,400,404 to 1,401,552
_1245
Psyr_1246: Psyr_1246 - TPR repeat protein:TPR repeat protein, at 1,401,579 to 1,402,337
_1246
Psyr_1247: Psyr_1247 - conserved hypothetical protein, at 1,402,337 to 1,403,341
_1247
Group
Condition
Psyr
_1243
Psyr
_1244
Psyr
_1245
Psyr
_1246
Psyr
_1247
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
-0.9
-0.3
-3.6
in planta
apoplastic, chopping recovery; Green bean
N.D.
N.D.
-0.2
-0.4
-3.4
aphid
library passed through aphids in food, 24 hours
N.D.
N.D.
-0.7
-0.3
-2.8
carbon source
Citric Acid (C)
N.D.
N.D.
-0.8
-0.0
-2.8
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
+0.1
-0.0
-3.7
stress
KB with Aristolochic Acid 10 mM
N.D.
N.D.
-0.6
-0.2
-2.2
stress
KB with Fusaric 250 ug/ml
N.D.
N.D.
-0.6
-0.2
-2.1
aphid
library passed through aphids in food, 24 hours
N.D.
N.D.
-0.1
-0.3
-2.5
in planta
apoplastic; Pepper
N.D.
N.D.
-0.4
-0.2
-2.3
in planta
epiphytic; Lima bean
N.D.
N.D.
+0.2
-0.3
-2.5
stress
KB with Benzalkonium Chloride 6.25 ug/ml
N.D.
N.D.
-0.6
+0.3
-2.2
carbon source
4-Aminobutyric (C)
N.D.
N.D.
-0.2
-0.1
-2.1
carbon source
D-Gluconic (C)
N.D.
N.D.
-0.2
-0.1
-2.0
in planta
apoplastic; Green bean; 6 days
N.D.
N.D.
-0.4
-0.2
-1.7
in planta
epiphytic; Lima bean
N.D.
N.D.
-0.4
+0.0
-1.9
stress
KB with Gossypol-Acetic Acid Complex 10 mM
N.D.
N.D.
-0.4
+0.0
-1.8
stress
KB with Fusaric 250 ug/ml
N.D.
N.D.
-0.3
+0.0
-1.9
carbon source
Succinic Acid (C)
N.D.
N.D.
-0.4
-0.1
-1.7
in planta
epiphytic; Green bean
N.D.
N.D.
-0.1
-0.1
-1.9
aphid
library passed through aphids in food, 24 hours
N.D.
N.D.
-0.4
-0.4
-1.2
stress
KB with Harmol 10 mM
N.D.
N.D.
+0.0
+0.1
-2.1
in planta
Green bean; epiphytic
N.D.
N.D.
-0.3
+0.2
-1.9
carbon source
Citric Acid (C)
N.D.
N.D.
+0.2
-0.1
-1.8
aphid
library passed through aphids in food, 72 hours
N.D.
N.D.
-0.8
+0.2
-1.0
in planta
epiphytic; Green bean
N.D.
N.D.
+0.3
+0.1
-1.8
in planta
epiphytic; Lima bean
N.D.
N.D.
-0.5
+0.4
-1.2
in planta
apoplastic; Green bean; 13 days
N.D.
N.D.
+0.6
+0.1
-1.9
carbon source
D-Mannose (C)
N.D.
N.D.
+0.6
+0.1
-1.9
carbon source
L-Malic (C)
N.D.
N.D.
+1.5
-0.1
+1.2
stress
KB with Nalidixic 12.5 ug/ml
N.D.
N.D.
+0.7
+0.2
+2.2
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