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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1125 and Psyr_1126 are separated by 206 nucleotides
Psyr_1126 and Psyr_1127 overlap by 11 nucleotides
Psyr_1127 and Psyr_1128 are separated by 10 nucleotides
Psyr_1128 and Psyr_1129 overlap by 4 nucleotides
Psyr_1125: Psyr_1125 - GGDEF domain protein, at 1,273,249 to 1,274,778
_1125
Psyr_1126: Psyr_1126 - Heavy metal sensor kinase, at 1,274,985 to 1,276,349
_1126
Psyr_1127: Psyr_1127 - Heavy metal response regulator, at 1,276,339 to 1,277,016
_1127
Psyr_1128: Psyr_1128 - Acriflavin resistance protein, at 1,277,027 to 1,280,131
_1128
Psyr_1129: Psyr_1129 - Secretion protein HlyD, at 1,280,128 to 1,281,294
_1129
Group
Condition
Psyr
_1125
Psyr
_1126
Psyr
_1127
Psyr
_1128
Psyr
_1129
in planta
epiphytic; Lima bean
+0.0
-1.1
-0.2
-0.0
-0.5
carbon source
Fumaric (C)
+0.0
-0.0
-0.9
-0.2
-0.3
carbon source
D-Mannose (C)
-0.1
-0.7
-0.5
-0.0
-0.1
carbon source
Succinic Acid (C)
-0.0
-0.3
-0.2
-0.3
-0.5
carbon source
L-Proline (C)
-0.1
-0.6
-0.1
-0.1
-0.4
aphid
library passed through aphids in food, 72 hours
-0.3
-0.4
-0.5
+0.1
-0.2
in planta
apoplastic; Lima bean
+0.0
-0.5
-0.5
+0.2
-0.4
carbon source
4-hydroxybutyric (C)
-0.1
-0.5
-0.5
+0.0
-0.2
stress
KB with L-alliin 10 mM
-0.1
+0.1
-0.7
-0.1
-0.2
in planta
apoplastic; Pepper
+0.1
-0.7
-0.4
-0.1
+0.1
carbon source
Citric Acid (C)
-0.2
-0.6
+0.3
-0.0
-0.2
in planta
apoplastic, sonication recovery; Green bean
+0.3
-0.5
-0.4
-0.1
+0.1
stress
KB with Phloretin 250 ug/ml
-0.1
+0.4
-0.6
+0.0
-0.0
no stress control
no stress control
-0.1
+0.3
-0.7
+0.1
-0.0
in planta
apoplastic, grinding recovery; Green bean
+0.0
-0.7
+0.3
+0.3
-0.1
stress
KB with Conessine 10 mM
+0.1
-0.3
+0.5
-0.0
-0.5
in planta
epiphytic; Green bean
+0.2
-0.6
+0.7
-0.2
-0.3
stress
KB with Methanol 5 vol%
+0.1
+0.3
-0.7
+0.1
+0.2
aphid
library passed through aphids in food, 72 hours
-0.1
-0.3
+0.6
+0.0
-0.2
in planta
epiphytic; Green bean
+0.3
-0.5
+0.5
-0.1
+0.0
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.0
-0.1
+1.1
-0.2
-0.5
in planta
epiphytic; Green bean
+0.3
+0.5
-0.6
+0.3
+0.1
in planta
Green bean; epiphytic
+0.1
-0.3
+1.0
-0.0
-0.1
in planta
apoplastic, chopping recovery; Green bean
+0.0
+0.1
+1.1
-0.3
-0.2
in planta
apoplastic, grinding recovery; Green bean
+0.0
-0.2
+0.7
+0.1
+0.2
stress
KB with Acridine orange 62.5 ug/ml
-0.1
+0.1
+1.4
+0.0
-0.5
in planta
apoplastic; Pepper
+0.1
-0.4
+1.2
+0.3
-0.1
stress
KB with Nitrofurantoin 125 ug/ml
+0.1
+0.4
+0.4
+0.0
+0.3
stress
KB with Mitomycin C 0.625 ug/ml
-0.1
+0.4
+1.7
-0.2
-0.3
in planta
apoplastic; Pepper
+0.2
+0.2
+1.2
+0.2
-0.0
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