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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1099 and Psyr_1100 overlap by 16 nucleotides
Psyr_1100 and Psyr_1101 are separated by 170 nucleotides
Psyr_1101 and Psyr_1102 are separated by 695 nucleotides
Psyr_1102 and Psyr_1103 are separated by 98 nucleotides
Psyr_1099: Psyr_1099 - Response regulator receiver, at 1,244,311 to 1,244,700
_1099
Psyr_1100: Psyr_1100 - PAS/PAC sensor signal transduction histidine kinase, at 1,244,685 to 1,246,415
_1100
Psyr_1101: Psyr_1101 - Helix-turn-helix, Fis-type, at 1,246,586 to 1,248,094
_1101
Psyr_1102: Psyr_1102 - conserved hypothetical protein, at 1,248,790 to 1,249,146
_1102
Psyr_1103: Psyr_1103 - Protein of unknown function DUF454, at 1,249,245 to 1,249,703
_1103
Group
Condition
Psyr
_1099
Psyr
_1100
Psyr
_1101
Psyr
_1102
Psyr
_1103
stress
KB with Theaflavin 10 mM
-0.5
-0.0
-0.3
-0.1
-0.3
stress
KB with Berberine 250 ug/ml
+0.1
+0.2
-0.3
-0.5
-0.7
stress
KB with Cimicifugoside H1 10 mM
-0.3
-0.2
-0.2
-0.2
-0.3
aphid
library passed through aphids in food, 72 hours
-0.2
-0.3
-0.2
-0.1
-0.3
stress
KB with Mitomycin C 0.625 ug/ml
-0.4
+0.4
-0.4
-0.7
-0.0
stress
KB with capsaicin 0.125 mg/ml
-0.2
-0.1
+0.1
-0.3
-0.4
stress
KB with Novobiocin 250 ug/ml
+0.2
-0.1
-0.3
-0.3
-0.4
stress
KB with Trimethoprim 125 ug/ml
+0.2
+0.0
-0.3
-0.1
-0.6
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.1
+0.3
-0.6
-0.6
-0.0
carbon source
Citric Acid (C)
-0.2
+0.2
-0.4
+0.0
-0.4
stress
KB with Isovanillin 10 mM
-0.4
-0.2
+0.2
+0.0
-0.3
stress
KB with Acacetin 10 mM
-0.3
-0.1
-0.2
+0.3
-0.4
carbon source
L-Malic (C)
-0.1
-0.1
-0.2
+0.4
-0.5
aphid
library passed through aphids in food, 72 hours
+0.0
-0.3
-0.1
+0.4
-0.4
carbon source
4-hydroxybutyric (C)
-0.1
+0.2
-0.3
+0.1
-0.3
in planta
apoplastic; Lima bean
-0.3
-0.2
-0.5
+0.4
+0.2
aphid
library passed through aphids in food, 72 hours
+0.2
+0.2
+0.1
+0.4
-0.9
in planta
epiphytic; Green bean
+0.2
+0.1
-0.1
+0.3
-0.5
in planta
apoplastic; Green bean; 13 days
+0.2
+0.5
+0.4
-0.5
-0.4
stress
KB with Fusaric 250 ug/ml
-0.2
+0.1
-0.4
+0.2
+0.5
in planta
apoplastic, sonication recovery; Green bean
-0.0
+0.2
+0.3
-0.5
+0.3
carbon source
Sucrose (C)
+0.4
+0.3
-0.3
+0.1
-0.1
in planta
apoplastic; Pepper
+0.2
-0.3
-0.3
+0.5
+0.4
in planta
apoplastic; Pepper
+0.1
+0.0
-0.4
+0.4
+0.3
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.1
+0.4
-0.5
+0.5
in planta
apoplastic, grinding recovery; Green bean
+0.0
-0.4
+0.2
+0.1
+0.5
in planta
apoplastic; Pepper
-0.4
-0.2
+0.4
+0.6
+0.4
in planta
apoplastic; Pepper
-0.4
+0.0
+0.3
+0.5
+0.4
in planta
epiphytic; Lima bean
+0.4
+0.0
+0.4
+0.4
-0.3
stress
DMSO
+0.5
-0.0
+0.2
+0.1
+0.4
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