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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1076 and Psyr_1077 are separated by 42 nucleotides
Psyr_1077 and Psyr_1078 are separated by 48 nucleotides
Psyr_1078 and Psyr_1079 are separated by 88 nucleotides
Psyr_1079 and Psyr_1080 overlap by 8 nucleotides
Psyr_1076: Psyr_1076 - Cyanate transport system protein, at 1,219,265 to 1,220,509
_1076
Psyr_1077: Psyr_1077 - Isoflavone reductase, at 1,220,552 to 1,221,490
_1077
Psyr_1078: Psyr_1078 - Protein of unknown function DUF24, at 1,221,539 to 1,221,982
_1078
Psyr_1079: Psyr_1079 - conserved hypothetical protein, at 1,222,071 to 1,222,562
_1079
Psyr_1080: Psyr_1080 - Excinuclease ABC, C subunit, N-terminal, at 1,222,555 to 1,222,896
_1080
Group
Condition
Psyr
_1076
Psyr
_1077
Psyr
_1078
Psyr
_1079
Psyr
_1080
in planta
apoplastic, grinding recovery; Green bean
-0.1
-0.2
-0.7
+0.1
-0.1
in planta
apoplastic; Green bean; 13 days
+0.2
-0.6
+0.1
-0.4
-0.1
stress
DMSO
+0.2
-0.0
-0.3
-0.5
-0.1
carbon source
L-Malic (C)
-0.1
+0.2
-0.3
-0.5
+0.2
stress
MBOA 0.5 mM
+0.1
+0.1
+0.2
-0.5
-0.4
stress
KB with Fusaric 250 ug/ml
+0.3
-0.2
-0.4
-0.3
+0.2
stress
KB with Mitomycin C 0.625 ug/ml
+0.2
-1.2
+0.4
+0.6
-0.1
in planta
apoplastic, sonication recovery; Green bean
-0.3
+0.2
+0.1
-0.5
+0.6
stress
KB with Nonanoic 10 mM
+0.1
+0.1
+0.1
-0.7
+0.4
in planta
apoplastic; Green bean; 6 days
+0.1
+0.4
-0.2
-0.3
+0.2
in planta
apoplastic, sonication recovery; Green bean
-0.1
-0.3
+0.3
-0.2
+0.5
in planta
apoplastic; Green bean; 6 days
+0.1
+0.4
-0.5
-0.0
+0.2
aphid
library passed through aphids in food, 72 hours
+0.2
+0.1
-0.0
+0.8
-0.7
in planta
apoplastic, grinding recovery; Green bean
+0.1
-0.6
+0.6
+0.3
+0.0
in planta
apoplastic; Lima bean
-0.2
-0.1
+0.6
+0.3
+0.1
stress
KB with Solanesol 10 mM
+0.1
+0.2
+0.4
-0.3
+0.3
in planta
epiphytic; Green bean
-0.1
+0.3
+0.4
-0.2
+0.4
in planta
apoplastic; Pepper
-0.1
+0.1
+0.4
+0.6
-0.3
carbon source
Sucrose (C)
-0.0
+0.1
+0.7
+0.2
-0.1
in planta
epiphytic; Green bean
-0.1
+0.3
+0.4
-0.1
+0.4
aphid
library passed through aphids in food, 72 hours
+0.3
+0.4
+0.1
-0.1
+0.3
stress
KB with Plumbagin 10 mM
+0.5
+0.3
+0.0
-0.3
+0.5
in planta
apoplastic; Lima bean
-0.1
-0.1
+0.6
+0.5
+0.1
carbon source
D-Mannose (C)
+0.1
+0.0
+0.2
+0.9
-0.1
in planta
apoplastic, chopping recovery; Green bean
+0.0
+0.3
+0.5
+0.5
-0.2
in planta
apoplastic; Pepper
+0.4
+0.4
+0.0
+0.3
+0.2
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.3
-0.5
+0.9
+0.7
-0.0
stress
KB with Diallyl sulfide 10 mM
+0.2
+0.4
+0.1
+0.2
+0.5
in planta
apoplastic; Pepper
+0.1
+0.6
-0.2
+0.4
+0.7
stress
KB with Paclitaxel 10 mM
+0.1
+0.4
+0.3
+0.5
+0.4
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