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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1051 and Psyr_1052 are separated by 158 nucleotides
Psyr_1052 and Psyr_1053 are separated by 119 nucleotides
Psyr_1053 and Psyr_1054 are separated by 12 nucleotides
Psyr_1054 and Psyr_1055 are separated by 10 nucleotides
Psyr_1051: Psyr_1051 - YD repeat protein, at 1,186,670 to 1,189,453
_1051
Psyr_1052: Psyr_1052 - mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP), at 1,189,612 to 1,191,063
_1052
Psyr_1053: Psyr_1053 - alginate biosynthesis protein AlgF, at 1,191,183 to 1,191,851
_1053
Psyr_1054: Psyr_1054 - alginate biosynthesis protein AlgJ, at 1,191,864 to 1,193,039
_1054
Psyr_1055: Psyr_1055 - Membrane bound O-acyl transferase, MBOAT, at 1,193,050 to 1,194,606
_1055
Group
Condition
Psyr
_1051
Psyr
_1052
Psyr
_1053
Psyr
_1054
Psyr
_1055
in planta
apoplastic; Lima bean
+0.0
-0.3
-1.6
-2.2
-1.8
in planta
apoplastic; Lima bean
+0.0
-0.3
-1.5
-2.0
-1.5
in planta
apoplastic; Lima bean
+0.1
-0.2
-1.3
-2.0
-1.8
in planta
apoplastic; Lima bean
+0.1
-0.3
-1.5
-1.5
-2.0
in planta
apoplastic, sonication recovery; Green bean
+0.0
-0.2
-1.8
-1.2
-1.8
in planta
apoplastic, sonication recovery; Green bean
-0.1
+0.1
-0.9
-1.5
-1.8
in planta
apoplastic; Green bean; 13 days
+0.1
-0.4
-1.3
-1.1
-1.5
in planta
apoplastic; Lima bean
+0.0
-0.4
-1.4
-0.9
-1.2
in planta
apoplastic, chopping recovery; Green bean
-0.0
-0.2
-0.7
-1.8
-1.0
in planta
apoplastic; Lima bean
+0.0
-0.3
-1.5
-0.8
-1.2
in planta
apoplastic, grinding recovery; Green bean
-0.1
-0.3
-0.6
-1.7
-1.1
in planta
apoplastic; Green bean; 6 days
+0.1
+0.3
-1.1
-1.3
-1.0
in planta
apoplastic; Green bean; 6 days
+0.1
+0.0
-1.2
-0.6
-1.2
in planta
apoplastic, grinding recovery; Green bean
+0.2
-0.2
-0.6
-1.3
-0.9
in planta
apoplastic; Pepper
-0.1
-0.0
-0.6
-0.4
-0.4
in planta
apoplastic; Pepper
+0.2
-0.1
-0.7
-0.2
-0.5
in planta
apoplastic; Pepper
+0.1
-0.2
-0.3
-0.3
-0.4
in planta
apoplastic; Pepper
+0.2
-0.1
-0.5
-0.2
-0.4
in planta
apoplastic; Pepper
+0.1
-0.1
-0.2
-0.2
-0.3
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
-0.0
+0.2
-0.4
+0.1
-0.1
stress
KB with Matrine 10 mM
+0.1
+0.1
-0.2
+0.3
-0.2
carbon source
L-Malic (C)
+0.2
-0.1
-0.2
+0.3
-0.2
stress
KB with Solanesol 10 mM
+0.2
-0.1
+0.4
-0.4
+0.0
stress
KB with Chrysin 10 mM
-0.0
+0.2
-0.2
+0.4
-0.2
stress
KB with Mitomycin C 0.625 ug/ml
-0.1
+0.2
-0.1
+0.5
-0.2
carbon source
D-Mannose (C)
+0.0
+0.3
+0.2
+0.4
+0.0
aphid
library passed through aphids in food, 72 hours
-0.0
+0.1
+0.5
+0.2
+0.2
aphid
library passed through aphids in food, 72 hours
-0.1
+0.1
+0.2
+0.3
+0.5
aphid
library passed through aphids in food, 72 hours
+0.1
+0.1
+0.4
+0.3
+0.5
carbon source
Sucrose (C)
+0.0
+0.1
+0.4
+0.5
+0.3
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