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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0998 and Psyr_0999 overlap by 1 nucleotides
Psyr_0999 and Psyr_1000 are separated by 293 nucleotides
Psyr_1000 and Psyr_1001 are separated by 213 nucleotides
Psyr_1001 and Psyr_1002 overlap by 4 nucleotides
Psyr_0998: Psyr_0998 - Isochorismatase hydrolase, at 1,131,651 to 1,132,388
_0998
Psyr_0999: Psyr_0999 - luciferase, at 1,132,388 to 1,133,470
_0999
Psyr_1000: Psyr_1000 - transcriptional regulator, TetR family, at 1,133,764 to 1,134,492
_1000
Psyr_1001: Psyr_1001 - nucleoside-binding protein, at 1,134,706 to 1,135,797
_1001
Psyr_1002: Psyr_1002 - nucleoside ABC transporter ATP-binding protein, at 1,135,794 to 1,137,305
_1002
Group
Condition
Psyr
_0998
Psyr
_0999
Psyr
_1000
Psyr
_1001
Psyr
_1002
aphid
library passed through aphids in food, 72 hours
-0.6
-0.3
-0.5
-0.4
+0.1
stress
KB with Curcumin 10 mM
-0.3
-0.4
+0.0
-0.1
-0.6
stress
KB with 4-hydroxychalcone 10 mM
-0.4
+0.1
-0.1
-0.1
-0.7
in planta
apoplastic; Pepper
-0.2
-0.5
-0.0
-0.3
+0.2
in planta
apoplastic, chopping recovery; Green bean
-0.7
+0.4
-0.1
+0.0
-0.3
stress
KB with Helenine 10 mM
-0.7
+0.3
+0.0
-0.1
-0.2
stress
KB with Ferulic Acid 180 ug/ml
+0.2
-0.1
-0.0
+0.1
-0.8
stress
KB with Physcion 10 mM
+0.3
+0.2
+0.1
-0.3
-0.6
aphid
library passed through aphids in food, 72 hours
-0.5
+0.3
-0.2
-0.3
+0.4
in planta
epiphytic; Green bean
+0.3
-0.4
-0.4
-0.1
+0.2
in planta
apoplastic; Green bean; 13 days
-0.4
+0.4
+0.4
-0.1
-0.4
in planta
apoplastic; Lima bean
-0.5
-0.2
-0.2
-0.2
+0.9
in planta
apoplastic; Pepper
+0.4
-0.4
+0.1
+0.1
-0.3
stress
KB with Paeonol 10 mM
+0.1
+0.4
+0.1
-0.1
-0.5
in planta
epiphytic; Green bean
+0.2
-0.1
+0.5
-0.1
-0.5
in planta
apoplastic; Pepper
-0.6
-0.1
+0.1
+0.2
+0.4
in planta
apoplastic; Pepper
+0.4
-0.4
+0.2
+0.0
+0.2
in planta
apoplastic, grinding recovery; Green bean
+1.1
-0.7
-0.2
+0.0
+0.5
stress
KB with Huperzine A 10 mM
+0.5
-0.3
+0.1
+0.1
+0.4
in planta
apoplastic, sonication recovery; Green bean
+0.3
-0.3
-0.0
+0.1
+0.7
in planta
apoplastic; Green bean; 6 days
+0.0
+0.2
+0.2
-0.1
+0.8
in planta
epiphytic; Green bean
+0.6
-0.0
+0.7
-0.1
-0.1
stress
KB with Acridine orange 62.5 ug/ml
+0.5
+0.3
-0.1
+0.2
+0.2
in planta
apoplastic; Lima bean
+0.2
+0.2
+0.4
+0.2
+0.2
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
+0.3
+0.3
+0.2
+0.0
+0.4
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.4
+0.1
+0.0
+0.4
+0.3
stress
KB with Mitomycin C 0.625 ug/ml
+0.5
-0.1
+0.4
+0.1
+0.6
in planta
apoplastic, sonication recovery; Green bean
+0.6
+0.2
-0.3
+0.2
+1.0
in planta
apoplastic; Lima bean
+0.3
+0.3
+0.4
+0.3
+0.4
stress
KB with Plumbagin 10 mM
+0.4
+1.7
+1.2
-0.1
-0.2
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