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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0993 and Psyr_0994 are separated by 24 nucleotides
Psyr_0994 and Psyr_0995 are separated by 256 nucleotides
Psyr_0995 and Psyr_0996 are separated by 26 nucleotides
Psyr_0996 and Psyr_0997 are separated by 41 nucleotides
Psyr_0993: Psyr_0993 - transcriptional regulator, LuxR family, at 1,125,648 to 1,128,410
_0993
Psyr_0994: Psyr_0994 - Metal-dependent phosphohydrolase, HD subdomain protein, at 1,128,435 to 1,129,616
_0994
Psyr_0995: Psyr_0995 - Flavin reductase-like protein, at 1,129,873 to 1,130,409
_0995
Psyr_0996: Psyr_0996 - Alpha/beta hydrolase fold protein, at 1,130,436 to 1,131,215
_0996
Psyr_0997: Psyr_0997 - Endoribonuclease L-PSP, at 1,131,257 to 1,131,640
_0997
Group
Condition
Psyr
_0993
Psyr
_0994
Psyr
_0995
Psyr
_0996
Psyr
_0997
in planta
apoplastic, sonication recovery; Green bean
-0.5
-0.2
-0.7
-0.1
-0.0
in planta
apoplastic, sonication recovery; Green bean
-0.6
-0.3
-0.3
-0.4
+0.3
in planta
apoplastic, grinding recovery; Green bean
-0.1
+0.2
-1.3
-0.4
+0.2
carbon source
4-hydroxybutyric (C)
-0.3
-0.2
-0.5
-0.2
+0.1
carbon source
Sucrose (C)
-0.2
-0.0
-0.4
+0.1
-0.2
in planta
epiphytic; Green bean
+0.2
+0.1
-0.5
-0.2
-0.2
carbon source
Citric Acid (C)
-0.2
+0.1
-0.4
+0.2
-0.1
in planta
apoplastic; Lima bean
+0.0
+0.1
+0.4
-0.2
-0.5
in planta
apoplastic; Green bean; 6 days
+0.1
+0.2
+0.2
-0.3
-0.2
in planta
apoplastic; Pepper
+0.1
+0.2
+0.4
-0.4
-0.3
stress
KB with capsaicin 0.25 mg/ml
+0.0
-0.2
+0.5
-0.2
-0.1
aphid
library passed through aphids in food, 72 hours
+0.3
+0.3
-0.5
-0.2
+0.2
stress
KB with Mitomycin C 0.625 ug/ml
+0.4
+0.0
+0.2
-0.3
-0.2
stress
KB with Isoliquiritigenin 10 mM
+0.2
-0.1
-0.4
+0.3
+0.2
stress
KB with Fusaric 250 ug/ml
+0.4
+0.2
-0.5
-0.0
+0.1
in planta
apoplastic; Pepper
+0.2
+0.2
+0.4
-0.3
-0.3
in planta
apoplastic; Green bean; 13 days
+0.3
-0.1
-0.1
-0.3
+0.3
stress
KB with Naringin 250 ug/ml
+0.3
+0.0
-0.4
+0.3
-0.0
stress
KB with Terpene 10 mM
+0.2
+0.1
-0.4
+0.2
+0.1
stress
KB with Ferulic Acid 180 ug/ml
+0.3
+0.0
-0.2
-0.2
+0.3
stress
KB with Fusaric 250 ug/ml
+0.5
-0.1
+0.1
-0.1
-0.1
stress
KB with capsaicin 0.125 mg/ml
+0.3
+0.0
+0.3
-0.4
+0.2
stress
KB with Flavone 0.125 mg/ml
+0.1
+0.0
+0.5
-0.2
-0.0
aphid
library passed through aphids in food, 72 hours
+0.2
+0.7
-0.1
-0.3
+0.0
in planta
epiphytic; Green bean
-0.1
-0.1
+0.4
+0.5
-0.1
in planta
apoplastic; Pepper
+0.6
-0.1
-0.4
+0.2
+0.3
stress
KB with Berberine 250 ug/ml
+0.3
+0.2
+0.5
+0.0
-0.3
aphid
library passed through aphids in food, 72 hours
+0.1
+0.2
-0.3
+0.6
+0.1
in planta
apoplastic; Pepper
+0.5
-0.1
+0.1
+0.4
+0.2
stress
KB with Plumbagin 10 mM
+0.1
-0.2
-0.0
+1.2
+1.2
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