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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0797 and Psyr_0798 are separated by 2 nucleotides
Psyr_0798 and Psyr_0799 are separated by 225 nucleotides
Psyr_0799 and Psyr_0800 are separated by 174 nucleotides
Psyr_0800 and Psyr_0801 are separated by 119 nucleotides
Psyr_0797: Psyr_0797 - type II secretion system protein, at 902,289 to 903,506
_0797
Psyr_0798: Psyr_0798 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 903,509 to 905,203
_0798
Psyr_0799: Psyr_0799 - Fimbrial protein pilin, at 905,429 to 905,848
_0799
Psyr_0800: Psyr_0800 - Protein of unknown function DUF1523, at 906,023 to 906,568
_0800
Psyr_0801: Psyr_0801 - conserved hypothetical protein, at 906,688 to 907,686
_0801
Group
Condition
Psyr
_0797
Psyr
_0798
Psyr
_0799
Psyr
_0800
Psyr
_0801
aphid
library passed through aphids in food, 24 hours
-0.2
-0.3
-0.4
+0.0
-0.1
aphid
library passed through aphids in food, 24 hours
-0.2
-0.3
-0.3
-0.1
-0.0
stress
KB with Benzalkonium Chloride 6.25 ug/ml
-0.3
+0.1
-0.0
-0.4
-0.2
aphid
library passed through aphids in food, 24 hours
-0.1
-0.3
-0.2
+0.0
+0.1
stress
KB with Mitomycin C 0.625 ug/ml
-0.5
-0.3
+0.5
-0.3
-0.0
stress
KB with Anisodamine Hydrobromide () 10 mM
-0.2
-0.2
+0.1
+0.1
-0.3
in planta
apoplastic; Lima bean
-0.2
+0.1
-0.3
-0.1
+0.2
stress
KB with Fusaric 250 ug/ml
-0.2
+0.2
-0.3
+0.1
+0.0
in planta
apoplastic, sonication recovery; Green bean
-0.0
+0.0
+0.5
-0.3
-0.3
in planta
apoplastic, sonication recovery; Green bean
-0.1
-0.0
+0.4
+0.1
-0.4
stress
KB with Chrysophanol 10 mM
+0.1
+0.1
-0.2
-0.2
+0.2
stress
KB with Avocatin A 10 mM
+0.2
+0.1
-0.5
+0.2
+0.0
in planta
epiphytic; Green bean
+0.1
+0.2
+0.3
-0.2
-0.4
stress
KB with Harmol 10 mM
+0.3
+0.2
-0.2
-0.2
-0.0
in planta
apoplastic; Pepper
+0.0
-0.0
-0.3
+0.2
+0.2
stress
KB with Piperic 10 mM
+0.3
+0.1
-0.2
-0.0
+0.2
carbon source
Glycerol (C)
+0.3
+0.2
+0.2
-0.2
-0.1
carbon source
Citric Acid (C)
+0.3
+0.0
+0.3
+0.1
-0.3
carbon source
L-Proline (C)
+0.4
-0.0
+0.2
-0.3
+0.1
in planta
apoplastic; Green bean; 13 days
-0.1
+0.2
+0.2
-0.1
+0.2
aphid
library passed through aphids in food, 72 hours
+0.0
+0.2
+0.3
-0.3
+0.2
carbon source
4-hydroxybutyric (C)
+0.4
+0.1
+0.3
-0.1
-0.1
in planta
Green bean; epiphytic
+0.4
+0.3
+0.2
+0.1
-0.1
in planta
apoplastic, grinding recovery; Green bean
+0.3
+0.3
+0.4
+0.0
-0.2
in planta
apoplastic; Pepper
+0.4
+0.3
+0.2
+0.3
-0.4
in planta
Green bean; epiphytic
+0.3
+0.2
+0.2
+0.1
+0.1
in planta
epiphytic; Lima bean
+0.2
+0.3
+0.1
+0.2
+0.0
stress
KB with Erythromycin 25 ug/ml
+0.3
+0.3
+0.4
-0.0
+0.0
in planta
epiphytic; Lima bean
+0.1
+0.3
+0.2
+0.7
-0.1
in planta
apoplastic; Pepper
+0.5
+0.2
+0.4
+0.3
-0.2
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