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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0669 and Psyr_0670 are separated by 123 nucleotides
Psyr_0670 and Psyr_0671 are separated by 285 nucleotides
Psyr_0671 and Psyr_0672 overlap by 4 nucleotides
Psyr_0672 and Psyr_0673 are separated by 11 nucleotides
Psyr_0669: Psyr_0669 - Amidohydrolase, at 757,959 to 759,314
_0669
Psyr_0670: Psyr_0670 - Short-chain dehydrogenase/reductase SDR, at 759,438 to 760,163
_0670
Psyr_0671: Psyr_0671 - nucleoside ABC transporter membrane protein, at 760,449 to 761,378
_0671
Psyr_0672: Psyr_0672 - nucleoside ABC transporter membrane protein, at 761,375 to 762,475
_0672
Psyr_0673: Psyr_0673 - nucleoside ABC transporter ATP-binding protein, at 762,487 to 764,040
_0673
Group
Condition
Psyr
_0669
Psyr
_0670
Psyr
_0671
Psyr
_0672
Psyr
_0673
aphid
library passed through aphids in food, 72 hours
-0.2
-0.3
+0.1
-0.0
-0.7
stress
KB with Berberine 250 ug/ml
-0.3
-0.4
-0.1
-0.0
-0.3
in planta
epiphytic; Green bean
-0.1
-0.4
+0.3
+0.3
-0.3
carbon source
L-Malic (C)
+0.1
-0.2
+0.3
+0.1
-0.6
in planta
epiphytic; Lima bean
-0.4
+0.3
+0.3
+0.0
-0.5
in planta
apoplastic; Pepper
-0.2
-0.2
+0.5
-0.1
-0.2
stress
KB with Novobiocin 250 ug/ml
+0.0
-0.2
+0.5
+0.1
-0.4
stress
KB with Gambogic Acid 10 mM
+0.2
+0.1
+0.3
+0.2
-0.5
in planta
apoplastic, sonication recovery; Green bean
+0.1
+0.6
-0.5
+0.1
+0.1
stress
KB with Prenyletin 10 mM
+0.1
+0.4
-0.4
+0.2
+0.1
aphid
library passed through aphids in food, 72 hours
+0.1
+0.2
+0.4
+0.0
-0.4
in planta
epiphytic; Green bean
-0.4
-0.3
+0.0
+0.3
+0.8
in planta
apoplastic; Lima bean
+0.3
+0.1
-0.3
+0.1
+0.3
in planta
apoplastic; Lima bean
+0.2
+0.0
-0.3
+0.0
+0.7
in planta
apoplastic, sonication recovery; Green bean
+0.2
+0.6
-0.3
+0.1
+0.1
in planta
Green bean; epiphytic
+0.4
-0.1
+0.4
+0.3
-0.2
stress
KB with Helenine 10 mM
+0.1
+0.3
-0.1
-0.0
+0.5
in planta
epiphytic; Green bean
-0.0
-0.1
+0.1
+0.3
+0.6
stress
KB with Acridine orange 62.5 ug/ml
+0.3
+0.4
+0.0
+0.4
-0.1
in planta
Green bean; epiphytic
+0.4
+0.1
+0.2
+0.3
-0.0
stress
KB with Avocatin A 10 mM
+0.1
+0.6
-0.0
+0.2
+0.2
stress
KB with Gossypetin 10 mM
+0.2
+0.4
+0.2
-0.0
+0.3
stress
KB with Dimethyl Sulfoxide 1 vol%
+0.0
+0.4
+0.2
+0.1
+0.4
stress
KB with Paclitaxel 10 mM
+0.1
+0.2
+0.2
+0.3
+0.3
stress
KB with Mitomycin C 0.625 ug/ml
+0.2
-0.0
+0.1
+0.3
+0.6
stress
KB with 4-hydroxychalcone 10 mM
+0.3
+0.2
+0.3
+0.1
+0.3
stress
DMSO
+0.2
+0.4
+0.0
+0.1
+0.5
in planta
apoplastic, chopping recovery; Green bean
-0.0
+0.5
+0.2
+0.4
+0.2
stress
KB with capsaicin 0.125 mg/ml
+0.1
+0.3
+0.2
+0.1
+0.5
in planta
apoplastic; Green bean; 13 days
+0.2
+0.6
+0.1
+0.2
+0.6
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