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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0660 and Psyr_0661 are separated by 159 nucleotides
Psyr_0661 and Psyr_0662 are separated by 78 nucleotides
Psyr_0662 and Psyr_0663 are separated by 77 nucleotides
Psyr_0663 and Psyr_0664 are separated by 273 nucleotides
Psyr_0660: Psyr_0660 - transcriptional regulator, ArsR family, at 748,513 to 749,205
_0660
Psyr_0661: Psyr_0661 - adenosine deaminase, at 749,365 to 750,318
_0661
Psyr_0662: Psyr_0662 - 2OG-Fe(II) oxygenase superfamily, at 750,397 to 751,362
_0662
Psyr_0663: Psyr_0663 - nucleoside-binding protein, at 751,440 to 752,534
_0663
Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599
_0664
Group
Condition
Psyr
_0660
Psyr
_0661
Psyr
_0662
Psyr
_0663
Psyr
_0664
carbon source
Citric Acid (C)
-0.0
+0.4
+0.1
-0.1
-3.1
in planta
epiphytic; Green bean
+0.1
-0.0
-0.4
+0.0
-0.8
in planta
epiphytic; Green bean
+0.1
+0.0
-0.3
-0.2
-0.6
in planta
apoplastic; Green bean; 6 days
+0.0
-0.2
-0.6
-0.0
-0.1
stress
KB with Bergenin 10 mM
-0.0
-0.2
-0.3
+0.0
-0.6
carbon source
D-Mannose (C)
+0.0
+0.1
-0.2
-0.1
-0.7
in planta
apoplastic; Lima bean
-0.3
-0.1
-0.5
-0.0
+0.2
carbon source
Sucrose (C)
+0.1
+0.3
-0.1
-0.1
-0.7
stress
KB with Isosafrole 10 mM
-0.1
-0.3
+0.3
-0.1
-0.3
aphid
library passed through aphids in food, 72 hours
-0.2
+0.4
+0.3
-0.0
-0.8
carbon source
L-Malic (C)
-0.3
+0.5
-0.3
-0.2
-0.0
stress
KB with Mitomycin C 0.625 ug/ml
+0.3
-0.2
-0.4
-0.0
+0.1
in planta
apoplastic; Pepper
-0.2
-0.1
+0.3
-0.0
-0.3
in planta
apoplastic, sonication recovery; Green bean
+0.5
+0.1
-0.0
-0.1
-0.6
in planta
apoplastic; Pepper
+0.2
-0.7
+0.3
+0.3
-0.3
stress
KB with Erythromycin 25 ug/ml
-0.2
+0.0
-0.4
+0.1
+0.3
in planta
apoplastic; Pepper
+0.2
-0.6
+0.0
+0.5
-0.1
in planta
Green bean; epiphytic
-0.3
-0.3
+0.1
+0.0
+0.5
in planta
apoplastic, sonication recovery; Green bean
+0.4
+0.2
-0.2
+0.0
-0.4
stress
KB with Isovanillin 10 mM
-0.1
-0.3
+0.2
-0.0
+0.3
stress
KB with Avocatin A 10 mM
+0.0
+0.5
+0.2
+0.0
-0.5
stress
KB with Khayasin C 10 mM
+0.1
+0.2
-0.3
+0.2
+0.2
stress
KB with Aristolochic Acid 10 mM
-0.1
+0.0
+0.5
-0.1
+0.2
stress
KB with Rifampicin 0.1 mg/ml
+0.3
+0.3
-0.1
+0.2
-0.1
stress
KB with Paeonol 10 mM
+0.2
+0.3
+0.4
+0.0
-0.1
stress
KB with Sclareolide 10 mM
+0.0
+0.4
+0.4
+0.2
-0.1
in planta
epiphytic; Lima bean
-0.1
+0.1
+0.1
+0.1
+0.7
stress
KB with Terpene 10 mM
-0.0
+0.3
+0.2
+0.1
+0.3
in planta
apoplastic; Green bean; 13 days
+0.6
+0.9
+0.3
-0.3
-0.3
in planta
epiphytic; Lima bean
+0.3
-0.0
+0.3
-0.1
+0.9
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